Return-Path: Received: from mx2.fz-rossendorf.de ([149.220.142.12] verified) by hzdr.de (CommuniGate Pro SMTP 6.1.11) with ESMTP id 14043614 for picongpu-users@cg.hzdr.de; Tue, 09 Aug 2016 17:49:03 +0200 Received: from localhost (localhost [127.0.0.1]) by mx2.fz-rossendorf.de (Postfix) with ESMTP id EA2AA45961 for ; Tue, 9 Aug 2016 17:49:03 +0200 (CEST) X-Virus-Scanned: Debian amavisd-new at mx2.fz-rossendorf.de Authentication-Results: mx2.fz-rossendorf.de (amavisd-new); dkim=pass (2048-bit key) header.d=gmail.com Received: from mx2.fz-rossendorf.de ([127.0.0.1]) by localhost (mx2.fz-rossendorf.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id 0nvBexyaB7Fw for ; Tue, 9 Aug 2016 17:48:58 +0200 (CEST) Received-SPF: Pass (sender SPF authorized) identity=mailfrom; client-ip=209.85.161.181; helo=mail-yw0-f181.google.com; envelope-from=djlexes@gmail.com; receiver=picongpu-users@hzdr.de Received: from mail-yw0-f181.google.com (mail-yw0-f181.google.com [209.85.161.181]) by mx2.fz-rossendorf.de (Postfix) with ESMTPS id 9EE594595D for ; Tue, 9 Aug 2016 17:48:57 +0200 (CEST) Received: by mail-yw0-f181.google.com with SMTP id u134so9297783ywg.3 for ; Tue, 09 Aug 2016 08:48:57 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:in-reply-to:references:from:date:message-id:subject:to; bh=smgavRRgB5EDUt3zm0WvFGILTPOEUcYbRgSH29DyBdY=; b=KGJcbdskuyyeeg08csyePYI1FgAZbql574VQuXrtD5s1bXE1zJB8lBWfs6fKJ3u0gd 94CVOKnwjxP6cCXOaXrpYMjmqguh+HXFH3bxkDyORC/9/BB107LiYxT5WkS1kEYsqWUe DTYC6ZplZhjEmKVH3+cJF/V8Cf0Ww8hUByDH/6mvg++8xJC2PXr3Lcvg/Dv+V19Fogm8 Lk7bwReGk5RaOhbxUIQCdwsHJ+T9AaoeMKVOJacTMLYC+EnXPPR80AcVTrTgpmsfIB0i iCyATKDQ9Y2LNyYmmlViyBSWp6EbvJRCmM9wQ+TpxOmy/9X/f/aLjbn9HxCPjm19//8P K/uw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:mime-version:in-reply-to:references:from:date :message-id:subject:to; bh=smgavRRgB5EDUt3zm0WvFGILTPOEUcYbRgSH29DyBdY=; b=edxV0nN0lcTJJW1rInNY4MYz6k/2TVfQMKMb7vUBeghO0J/lJo1MJF5az8elKpC0Nt iiLC6Rdy02pVHj8X7igfksKI3mJiHqUkgmYxIMVl8D96z+T389nQ9v+rn2Db7Goq0WEZ HSIZci2WXZDd1luK317Jj8hJjaKpWlFf1sM1R9qSxiOMinndrabm6rDScrJL2xYgpCE0 gjOnZl7RIaDSP8kOH4wuEWppoQA9tEkG+0YP1cY2qujEsqo/w5d7vnzv7B+paKEzMTjO VTtziJesnsaFn5E7gNvvNwjCKND+Tt4748X8l9+KoXWFPHxsjoKcNSdy1K8DmJ0eeZOe wVKQ== X-Gm-Message-State: AEkooutq4qr1UmNgso7J0qEvJNa9ayGD1hDsQI8LyNMftkEOgHW+NgOlTU2z8jw0AsYT1QnomaIrVzhdfHna3A== X-Received: by 10.13.198.65 with SMTP id i62mr40695972ywd.92.1470757736140; Tue, 09 Aug 2016 08:48:56 -0700 (PDT) MIME-Version: 1.0 Received: by 10.13.227.4 with HTTP; Tue, 9 Aug 2016 08:48:55 -0700 (PDT) In-Reply-To: References: From: Alex Francisco Date: Tue, 9 Aug 2016 10:48:55 -0500 Message-ID: Subject: Re: [PIConGPU-Users] [PIConGPU-Users] [PIConGPU-Users] Compiling splash2txt To: picongpu-users@hzdr.de Content-Type: multipart/alternative; boundary=001a114d741269d7160539a578c9 --001a114d741269d7160539a578c9 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable When I execute: make install, it is not copying the binaries /bin to this folder, alex@alex-Satellite-L635:~/paramSets/case001$ ls cmakeFlags include splash2txt submit also when I am in the folder ~/src/picongpu, show me this, when I execute cmake -L: alex@alex-Satellite-L635:~/src/picongpu$ cmake -L *CMake Error: The source "/home/alex/src/picongpu/CMakeLists.txt" does not match the source "/home/alex/src/picongpu/src/tools/splash2txt/CMakeLists.txt" used to generate cache. Re-run cmake with a different source directory.* -- Cache values ADIOS_CONFIG:FILEPATH=3D/usr/bin/adios_config CMAKE_BUILD_TYPE:STRING=3DDebug CMAKE_INSTALL_PREFIX:PATH=3D/home/alex/paramSets/case001 HDF5_DIR:PATH=3DHDF5_DIR-NOTFOUND MPI_EXTRA_LIBRARY:STRING=3D/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/lib= dl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so MPI_LIBRARY:FILEPATH=3D/usr/lib/libmpi_cxx.so Splash_LIBRARIES:FILEPATH=3D/home/alex/lib/splash/lib/libsplash.a Splash_ROOT_DIR:PATH=3D/home/alex/lib/splash 2016-08-08 15:41 GMT-05:00 Marco Garten : > Dear Alex, > > the TBG command as you executed it uses the relative path from inside > your paramSet. The config file is located inside > ~/paramSets/case001/submit - just like the hardware template file > k20_profile.tpl is in ~/paramSets/case001/submit/hypnos/. > So either execute the command from ~/paramSets/case001 or use the > absolute path. > > Don't forget to delete the folder ~/runs/testBatch01/ before because > otherwise TBG will tell you that the job name is already in use. (The > run folders all contain a copy of the executable and the parameter set > regardless if the job is running or not) > > You seem to be using the config files and the architecture template of > our home cluster on your local machine, though. That would require you > to have 16 GPUs if you use the 0016gpus.cfg file. If you want to do a > quick test whether the code is running at all you can just execute: > > cd ~/paramSets/case001/bin > > ./picongpu -d 1 1 1 -g 64 128 64 -s 1000 > > This will run the code with one GPU on a grid of 64 x 128 x 64 cells for > 1000 steps. > Please look at any of the *gpus.cfg files for additional options to the > command that will generate output. I would recommend something like: > > --png_e.period 50 --png_e.axis yz --png_e.slicePoint 0.5 --png_e.folder > pngElectronsYZ --elec_cnt.period 50 > > This will give you the total count of electrons in the simulation at > every 50th time step and also a PNG showing a YZ slice of the electron > charge density. The output will now be created directly in the "bin" > folder where your executable is. > > Hope this works for you! > > Best, > > Marco > > Am 08.08.2016 um 18:14 schrieb Alex Francisco: > > Thank you very much this worked!!! > > > > When I do execute this line of code in my terminal show this: > > > > alex@alex-Satellite-L635:~/src/picongpu$ tbg -s qsub -c > > submit/0016gpus.cfg -t ~/paramSets/case001/submit/hypnos/k20_profile.tp= l > > ~/runs/testBatch01/ > > > > The given cfg file "submit/0016gpus.cfg" does not exist (-c|--cfg). > > > > > > However, I turn to the folder case001 and there show me the folder > > testBatch01, I ask to yours, if it can be showing me this because I onc= e > > create and do not need to recreate the subfolder (testBatch01) ?? > > > > alex@alex-Satellite-L635:~/runs$ ls > > testBatch01 > > > > and in the folder testBatch01 show me this files: > > > > alex@alex-Satellite-L635:~/runs/testBatch01$ ls > > picongpu tbg > > > > > > Furthermore, as I view the simulation output? > > > > > > I hope you can help me. > > > > Thank you very much. > > > > Alex Estupi=C3=B1=C3=A1n. > > > > > > 2016-08-06 11:33 GMT-05:00 Huebl, Axel > >: > > > > I also fixed that compile problem in splash2txt by now. > > > > > > https://github.com/ComputationalRadiationPhysics/picongpu/pull/1545 > > > > > > > You can just remove or comment out via "//" the line that is causin= g > the > > error. > > > > > > Axel > > > > On 06.08.2016 11:07, Axel Huebl wrote: > > > Dear Alex, > > > > > > You don't need to build the helper tool in post-processing, > > splash2txt for now. Just skip step 6. > > > > > > Otherwise: please make sure the source code is unmodified. For > > compile errors, please report compiler version, cmake version, cmak= e > > -L . output and ubuntu version. > > > > > > Compile issues are also best tracked in our github since we can > > assign, track, link and archive it there. > > > > > > Axel > > > > > > On August 6, 2016 10:56:09 AM EDT, "Bussmann, Dr. Michael (FWKT) = - > > 4167" > wrote: > > >> Dear Alex, > > >> > > >> Could you please tell us which version of PIConGPU you are using= , > > >> provide CMake log files and CMakeLists.txt so we can have a look > at > > >> what > > >> is going on. > > >> > > >> Best, Michael > > >> > > >> Am 05.08.2016 um 18:13 schrieb Alex Francisco: > > >>> Dear Michael Bussmann and picongpu users: > > >>> > > >>> I appreciate your help, I already understood that ADIOS is > optional, > > >> but > > >>> when i continue, my ubuntu terminal show me, the following erro= r, > > >> when I > > >>> execute the step 6 "make -j": > > >>> > > >>> [ 50%] Building CXX object > > CMakeFiles/splash2txt.dir/splash2txt.cpp.o > > >>> /home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp: In > > >> function > > >>> =E2=80=98bool parseOptions(int, char**, ProgramOptions&)=E2=80= =99: > > >>> /home/alex/src/picongpu/src/tools/splash2txt/splash2txt. > cpp:164:24: > > >>> error: =E2=80=98desc=E2=80=99 was not declared in this scope > > >>> errorStream << desc << "\n"; > > >>> ^ > > >>> CMakeFiles/splash2txt.dir/build.make:54: recipe for target > > >>> 'CMakeFiles/splash2txt.dir/splash2txt.cpp.o' failed > > >>> make[2]: *** [CMakeFiles/splash2txt.dir/splash2txt.cpp.o] Error > 1 > > >>> CMakeFiles/Makefile2:60: recipe for target > > >>> 'CMakeFiles/splash2txt.dir/all' failed > > >>> make[1]: *** [CMakeFiles/splash2txt.dir/all] Error 2 > > >>> Makefile:117: recipe for target 'all' failed > > >>> make: *** [all] Error 2 > > >>> > > >>> Im=C3=A1genes integradas 1 > > >>> > > >>> > > >>> I hope you can help me. > > >>> > > >>> Thank you very much. > > >>> > > >>> Alex Estupi=C3=B1=C3=A1n. > > >>> > > >>> > > >>> 2016-08-02 6:34 GMT-05:00 Bussmann, Dr. Michael (FWKT) - 4167 > > >>> > > >>: > > >>> > > >>> Oops, sorry, you completed step 5 and can go to step 6. My > bad! > > >>> > > >>> Am 02.08.2016 um 13:25 schrieb Bussmann, Dr. Michael (FWKT)= - > > >> 4167: > > >>> > Dear Alex, > > >>> > > > >>> > As Axel pointed out in his E-mail, this is no error. It > simply > > >>> tells you > > >>> > that a software component is missing that is optional, bu= t > not > > >>> required > > >>> > to build PIConGPU. This means PIConGPU can use ADIOS, but > does > > >> not > > >>> need > > >>> > it to run properly. > > >>> > > > >>> > Yes, this is a bit confusing, but as you see the output > tells > > >> you that > > >>> > your build files have been written to > /home/alex/src/picongpu. > > >> So > > >>> > everything is fine! > > >>> > > > >>> > You have now completed step 6 in the install process, see > > here: > > >>> > > > >>> > > >> > > https://github.com/ComputationalRadiationPhysics/ > picongpu/blob/release-0.1.2/doc/INSTALL.md > > picongpu/blob/release-0.1.2/doc/INSTALL.md> > > >>> > > >> > > picongpu/blob/release-0.1.2/doc/INSTALL.md > > picongpu/blob/release-0.1.2/doc/INSTALL.md>> > > >>> > > > >>> > As Axel also wrote, you can now simply go to step 7, typi= ng > > >> 'make'. > > >>> > > > >>> > If you run into problems, please provide error log files > with > > >> your > > >>> > E-mails and keep posting to the Users mailing list. > > >>> > > > >>> > Hope this helps, Michael > > >>> > > > >>> > Am 02.08.2016 um 03:38 schrieb Alex Francisco: > > >>> >> Dear Michael Bussmann: > > >>> >> > > >>> >> I hope you are well. I am a doctoral student at the > > University > > >> of > > >>> >> Colombia UIS. I am installing the PiconGpu program on my > > >> laptop, my > > >>> >> laptop has a software ubuntu 16.04 LTS 64-bit. > > >>> >> > > >>> >> My ubuntu terminal shows me the following error: > > >>> >> > > >>> >> -- Could NOT find ADIOS (missing: ADIOS_LIBRARIES > > >>> ADIOS_INCLUDE_DIRS) > > >>> >> (Required is at least version "1.6.0") > > >>> >> > > >>> >> > > >>> >> Im=C3=A1genes integradas 1 > > >>> >> > > >>> >> > > >>> >> the problem still, I am very interested in I can solve > this > > >>> problem. I > > >>> >> need install this program for work in my doctoral job. > > >>> >> > > >>> >> I hope you can help me. > > >>> >> > > >>> >> Thank you very much. > > >>> >> > > >>> >> Alex Estupi=C3=B1=C3=A1n. > > >>> >> > > >>> > > > >>> > ############################## > ############################### > > >>> > This message is sent to you because you are subscribed to > > >>> > the mailing list > > > >>> > >>. > > >>> > To unsubscribe, E-mail to: > > > >>> > >> > > >>> > To switch to the DIGEST mode, E-mail to > > >>> > > > >> > >> > > >>> > To switch to the INDEX mode, E-mail to > > >>> > > > >> > >> > > >>> > Send administrative queries to > > request@hzdr.de> > > >>> > >> > > >>> > > > >>> > > >>> ###########################################################= # > # > > >>> This message is sent to you because you are subscribed to > > >>> the mailing list > > > >>> > >>. > > >>> To unsubscribe, E-mail to: > > > >>> > >> > > >>> To switch to the DIGEST mode, E-mail to > > >>> > > > >> > >> > > >>> To switch to the INDEX mode, E-mail to > > >> hzdr.de> > > >>> > >> > > >>> Send administrative queries to > > request@hzdr.de> > > >>> > >> > > >>> > > >>> > > >> > > >> ############################################################# > > >> This message is sent to you because you are subscribed to > > >> the mailing list > >. > > >> To unsubscribe, E-mail to: > > > > >> To switch to the DIGEST mode, E-mail to > > >> > > >> To switch to the INDEX mode, E-mail to > > = > > > >> Send administrative queries to > > > > > > > > > > > ############################################################# > > > This message is sent to you because you are subscribed to > > > the mailing list > >. > > > To unsubscribe, E-mail to: > > > > > To switch to the DIGEST mode, E-mail to > > >> > > > To switch to the INDEX mode, E-mail to > > = > > > > Send administrative queries to > > > > > > > > > -- > > > > Axel Huebl > > Phone +49 351 260 3582 > > https://www.hzdr.de/crp > > Computational Radiation Physics > > Laser Particle Acceleration Division > > Helmholtz-Zentrum Dresden - Rossendorf e.V. > > > > Bautzner Landstrasse 400, 01328 Dresden > > POB 510119, D-01314 Dresden > > Vorstand: Prof. Dr.Dr.h.c. R. Sauerbrey > > Prof. Dr.Dr.h.c. P. Joehnk > > VR 1693 beim Amtsgericht Dresden > > > > > > ############################################################# > This message is sent to you because you are subscribed to > the mailing list . > To unsubscribe, E-mail to: > To switch to the DIGEST mode, E-mail to > To switch to the INDEX mode, E-mail to > Send administrative queries to > > --001a114d741269d7160539a578c9 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
When I execute: make install, it is not copying= the binaries /bin to this folder,

alex@alex-= Satellite-L635:~/paramSets/case001$ ls
cmakeFlags=C2=A0 include=C2=A0 sp= lash2txt=C2=A0 submit

also when I am in the folder ~/src/= picongpu, show me this, when I execute cmake -L:

alex@alex-Satellite= -L635:~/src/picongpu$ cmake -L
CMake Error: The source "/home/al= ex/src/picongpu/CMakeLists.txt" does not match the source "/home/= alex/src/picongpu/src/tools/splash2txt/CMakeLists.txt" used to generat= e cache.=C2=A0 Re-run cmake with a different source directory.
-- Ca= che values
ADIOS_CONFIG:FILEPATH=3D/usr/bin/adios_config
CMAKE_BUILD_= TYPE:STRING=3DDebug
CMAKE_INSTALL_PREFIX:PATH=3D/home/alex/paramSets/cas= e001
HDF5_DIR:PATH=3DHDF5_DIR-NOTFOUND
MPI_EXTRA_LIBRARY:STRING=3D/us= r/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gn= u/libhwloc.so
MPI_LIBRARY:FILEPATH=3D/usr/lib/libmpi_cxx.so
Splash_LI= BRARIES:FILEPATH=3D/home/alex/lib/splash/lib/libsplash.a
Splash_ROOT_DIR= :PATH=3D/home/alex/lib/splash


2016-08-08 15:41 GMT-05:00 Marco Garten <m.= garten@hzdr.de>:
Dear Ale= x,

the TBG command as you executed it uses the relative path from inside
your paramSet. The config file is located inside
~/paramSets/case001/submit - just like the hardware template file
k20_profile.tpl is in ~/paramSets/case001/submit/hypnos/.
So either execute the command from ~/paramSets/case001 or use the
absolute path.

Don't forget to delete the folder ~/runs/testBatch01/ before because otherwise TBG will tell you that the job name is already in use. (The
run folders all contain a copy of the executable and the parameter set
regardless if the job is running or not)

You seem to be using the config files and the architecture template of
our home cluster on your local machine, though. That would require you
to have 16 GPUs if you use the 0016gpus.cfg file. If you want to do a
quick test whether the code is running at all you can just execute:

cd ~/paramSets/case001/bin

./picongpu -d 1 1 1 -g 64 128 64 -s 1000

This will run the code with one GPU on a grid of 64 x 128 x 64 cells for 1000 steps.
Please look at any of the *gpus.cfg files for additional options to the
command that will generate output. I would recommend something like:

--png_e.period 50 --png_e.axis yz --png_e.slicePoint 0.5 --png_e.folder
pngElectronsYZ --elec_cnt.period 50

This will give you the total count of electrons in the simulation at
every 50th time step and also a PNG showing a YZ slice of the electron
charge density. The output will now be created directly in the "bin&qu= ot;
folder where your executable is.

Hope this works for you!

Best,

Marco

Am 08.08.2016 um 18:14 schrieb Alex Francisco:
> Thank you very much this worked!!!
>
> When I do execute this line of code in my terminal show this:
>
> alex@alex-Satellite-L635:~/src/picongpu$ tbg -s qsub -c
> submit/0016gpus.cfg -t ~/paramSets/case001/submit/hypnos/k20_prof= ile.tpl
> ~/runs/testBatch01/
>
> The given cfg file "submit/0016gpus.cfg" does not exist (-c|= --cfg).
>
>
> However, I turn to the folder case001 and there show me the folder
> testBatch01, I ask to yours, if it can be showing me this because I on= ce
> create and do not need to recreate the subfolder (testBatch01) ??
>
> alex@alex-Satellite-L635:~/runs$ ls
> testBatch01
>
> and in the folder testBatch01 show me this files:
>
> alex@alex-Satellite-L635:~/runs/testBatch01$ ls
> picongpu=C2=A0 tbg
>
>
> Furthermore, as I view the simulation output?
>
>
> I hope you can help me.
>
> Thank you very much.
>
> Alex Estupi=C3=B1=C3=A1n.
>
>
> 2016-08-06 11:33 GMT-05:00 Huebl, Axel <a.huebl@hzdr.de
> <mailto:a.huebl@hzdr.de>>:
>
>=C2=A0 =C2=A0 =C2=A0I also fixed that compile problem in splash2txt by = now.
>
>
>=C2=A0 =C2=A0 =C2=A0https://g= ithub.com/ComputationalRadiationPhysics/picongpu/pull/1545 >=C2=A0 =C2=A0 =C2=A0<https= ://github.com/ComputationalRadiationPhysics/picongpu/pull/1545>
>
>=C2=A0 =C2=A0 =C2=A0You can just remove or comment out via "//&quo= t; the line that is causing the
>=C2=A0 =C2=A0 =C2=A0error.
>
>
>=C2=A0 =C2=A0 =C2=A0Axel
>
>=C2=A0 =C2=A0 =C2=A0On 06.08.2016 11:07, Axel Huebl wrote:
>=C2=A0 =C2=A0 =C2=A0> Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> You don't need to build the helper tool in= post-processing,
>=C2=A0 =C2=A0 =C2=A0splash2txt for now. Just skip step 6.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> Otherwise: please make sure the source code is= unmodified. For
>=C2=A0 =C2=A0 =C2=A0compile errors, please report compiler version, cma= ke version, cmake
>=C2=A0 =C2=A0 =C2=A0-L . output and ubuntu version.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> Compile issues are also best tracked in our gi= thub since we can
>=C2=A0 =C2=A0 =C2=A0assign, track, link and archive it there.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> Axel
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> On August 6, 2016 10:56:09 AM EDT, "Bussm= ann, Dr. Michael (FWKT) -
>=C2=A0 =C2=A0 =C2=A04167" <m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>> wrote:
>=C2=A0 =C2=A0 =C2=A0>> Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>> Could you please tell us which version of = PIConGPU you are using,
>=C2=A0 =C2=A0 =C2=A0>> provide CMake log files and CMakeLists.txt= so we can have a look at
>=C2=A0 =C2=A0 =C2=A0>> what
>=C2=A0 =C2=A0 =C2=A0>> is going on.
>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>> Best, Michael
>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>> Am 05.08.2016 um 18:13 schrieb Alex Franci= sco:
>=C2=A0 =C2=A0 =C2=A0>>> Dear Michael Bussmann and picongpu use= rs:
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> I appreciate your help, I already unde= rstood that ADIOS is optional,
>=C2=A0 =C2=A0 =C2=A0>> but
>=C2=A0 =C2=A0 =C2=A0>>> when i continue, my ubuntu terminal sh= ow me, the following error,
>=C2=A0 =C2=A0 =C2=A0>> when I
>=C2=A0 =C2=A0 =C2=A0>>> execute the step 6 "make -j"= :
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> [ 50%] Building CXX object
>=C2=A0 =C2=A0 =C2=A0CMakeFiles/splash2txt.dir/splash2txt.cpp.o
>=C2=A0 =C2=A0 =C2=A0>>> /home/alex/src/picongpu/src/tools= /splash2txt/splash2txt.cpp: In
>=C2=A0 =C2=A0 =C2=A0>> function
>=C2=A0 =C2=A0 =C2=A0>>> =E2=80=98bool parseOptions(int, char**= , ProgramOptions&)=E2=80=99:
>=C2=A0 =C2=A0 =C2=A0>>> /home/alex/src/picongpu/src/tools= /splash2txt/splash2txt.cpp:164:24:
>=C2=A0 =C2=A0 =C2=A0>>> error: =E2=80=98desc=E2=80=99 was not = declared in this scope
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 erro= rStream << desc << "\n";
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0^
>=C2=A0 =C2=A0 =C2=A0>>> CMakeFiles/splash2txt.dir/build.m= ake:54: recipe for target
>=C2=A0 =C2=A0 =C2=A0>>> 'CMakeFiles/splash2txt.dir/sp= lash2txt.cpp.o' failed
>=C2=A0 =C2=A0 =C2=A0>>> make[2]: *** [CMakeFiles/splash2txt.di= r/splash2txt.cpp.o] Error 1
>=C2=A0 =C2=A0 =C2=A0>>> CMakeFiles/Makefile2:60: recipe for ta= rget
>=C2=A0 =C2=A0 =C2=A0>>> 'CMakeFiles/splash2txt.dir/al= l' failed
>=C2=A0 =C2=A0 =C2=A0>>> make[1]: *** [CMakeFiles/splash2txt.di= r/all] Error 2
>=C2=A0 =C2=A0 =C2=A0>>> Makefile:117: recipe for target 'a= ll' failed
>=C2=A0 =C2=A0 =C2=A0>>> make: *** [all] Error 2
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> Im=C3=A1genes integradas 1
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> I hope you can help me.
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> Thank you very much.
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> Alex Estupi=C3=B1=C3=A1n.
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>> 2016-08-02 6:34 GMT-05:00 Bussmann, Dr= . Michael (FWKT) - 4167
>=C2=A0 =C2=A0 =C2=A0>>> <m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>:
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0Oops, sorry, you co= mpleted step 5 and can go to step 6. My bad!
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0Am 02.08.2016 um 13= :25 schrieb Bussmann, Dr. Michael (FWKT) -
>=C2=A0 =C2=A0 =C2=A0>> 4167:
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> As Axel pointe= d out in his E-mail, this is no error. It simply
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0tells you
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> that a softwar= e component is missing that is optional, but not
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0required
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> to build PICon= GPU. This means PIConGPU can use ADIOS, but does
>=C2=A0 =C2=A0 =C2=A0>> not
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0need
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> it to run prop= erly.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> Yes, this is a= bit confusing, but as you see the output tells
>=C2=A0 =C2=A0 =C2=A0>> you that
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> your build fil= es have been written to /home/alex/src/picongpu.
>=C2=A0 =C2=A0 =C2=A0>> So
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> everything is = fine!
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> You have now c= ompleted step 6 in the install process, see
>=C2=A0 =C2=A0 =C2=A0here:
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0https://github.com/ComputationalRadiationPhysics/p= icongpu/blob/release-0.1.2/doc/INSTALL.md
>=C2=A0 =C2=A0 =C2=A0<https://github.com/ComputationalRadiationPhysics/picongpu/blob/release-0.1.2/doc/INSTALL.md>
>=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0<https://github.com/ComputationalRadiationPhysics/picongpu/blob/release-0.1.2/doc/INSTALL.md
>=C2=A0 =C2=A0 =C2=A0<https://github.com/ComputationalRadiationPhysics/picongpu/blob/release-0.1.2/doc/INSTALL.md>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> As Axel also w= rote, you can now simply go to step 7, typing
>=C2=A0 =C2=A0 =C2=A0>> 'make'.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> If you run int= o problems, please provide error log files with
>=C2=A0 =C2=A0 =C2=A0>> your
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> E-mails and ke= ep posting to the Users mailing list.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> Hope this help= s, Michael
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> Am 02.08.2016 = um 03:38 schrieb Alex Francisco:
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> Dear Micha= el Bussmann:
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> I hope you= are well. I am a doctoral student at the
>=C2=A0 =C2=A0 =C2=A0University
>=C2=A0 =C2=A0 =C2=A0>> of
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> Colombia U= IS. I am installing the PiconGpu program on my
>=C2=A0 =C2=A0 =C2=A0>> laptop, my
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> laptop has= a software ubuntu 16.04 LTS 64-bit.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> My ubuntu = terminal shows me the following error:
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> -- Could N= OT find ADIOS (missing:=C2=A0 ADIOS_LIBRARIES
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0ADIOS_INCLUDE_DIRS)=
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> (Required = is at least version "1.6.0")
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> Im=C3=A1ge= nes integradas 1
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> the proble= m still, I am very interested in I can solve this
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0problem. I
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> need insta= ll this program for work in my doctoral job.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> I hope you= can help me.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> Thank you = very much.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>> Alex Estup= i=C3=B1=C3=A1n.
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> ##############= ###############################################
>=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> This message i= s sent to you because you are subscribed to
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>=C2=A0 =C2=A0 =C2=A0--
>
>=C2=A0 =C2=A0 =C2=A0Axel Huebl
>=C2=A0 =C2=A0 =C2=A0Phone +49 351 260 3582 <tel:%2B49%20351%20260%203582&g= t;
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>=C2=A0 =C2=A0 =C2=A0Vorstand: Prof. Dr.Dr.h.c. R. Sauerbrey
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Prof. Dr.Dr.h.c.= P. Joehnk
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