picongpu-users@hzdr.de Mailing List Archive

Thank you very much this worked!!!

When I do execute this line of code in my terminal show this:

alex@alex-Satellite-L635:~/src/picongpu$ tbg -s qsub -c submit/0016gpus.cfg -t ~/paramSets/case001/submit/hypnos/k20_profile.tpl ~/runs/testBatch01/

The given cfg file "submit/0016gpus.cfg" does not exist (-c|--cfg).

However, I turn to the folder case001 and there show me the folder testBatch01, I ask to yours, if it can be showing me this because I once create and do not need to recreate the subfolder (testBatch01) ??

alex@alex-Satellite-L635:~/runs$ ls
testBatch01

and in the folder testBatch01 show me this files:

alex@alex-Satellite-L635:~/runs/testBatch01$ ls
picongpu tbg

Furthermore, as I view the simulation output?

I hope you can help me.

Thank you very much.

Alex Estupiñán.

2016-08-06 11:33 GMT-05:00 Huebl, Axel <a.huebl@hzdr.de>:

I also fixed that compile problem in splash2txt by now.

https://github.com/ComputationalRadiationPhysics/picongpu/pull/1545

You can just remove or comment out via "//" the line that is causing the
error.

Axel

On 06.08.2016 11:07, Axel Huebl wrote:
> Dear Alex,
>
> You don't need to build the helper tool in post-processing, splash2txt for now. Just skip step 6.
>
> Otherwise: please make sure the source code is unmodified. For compile errors, please report compiler version, cmake version, cmake -L . output and ubuntu version.
>
> Compile issues are also best tracked in our github since we can assign, track, link and archive it there.
>
> Axel
>
> On August 6, 2016 10:56:09 AM EDT, "Bussmann, Dr. Michael (FWKT) - 4167" <m.bussmann@hzdr.de> wrote:
>> Dear Alex,
>>
>> Could you please tell us which version of PIConGPU you are using,
>> provide CMake log files and CMakeLists.txt so we can have a look at
>> what
>> is going on.
>>
>> Best, Michael
>>
>> Am 05.08.2016 um 18:13 schrieb Alex Francisco:
>>> Dear Michael Bussmann and picongpu users:
>>>
>>> I appreciate your help, I already understood that ADIOS is optional,
>> but
>>> when i continue, my ubuntu terminal show me, the following error,
>> when I
>>> execute the step 6 "make -j":
>>>
>>> [ 50%] Building CXX object CMakeFiles/splash2txt.dir/splash2txt.cpp.o
>>> /home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp: In
>> function
>>> ‘bool parseOptions(int, char**, ProgramOptions&)’:
>>> /home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp:164:24:
>>> error: ‘desc’ was not declared in this scope
>>> errorStream << desc << "\n";
>>> ^
>>> CMakeFiles/splash2txt.dir/build.make:54: recipe for target
>>> 'CMakeFiles/splash2txt.dir/splash2txt.cpp.o' failed
>>> make[2]: *** [CMakeFiles/splash2txt.dir/splash2txt.cpp.o] Error 1
>>> CMakeFiles/Makefile2:60: recipe for target
>>> 'CMakeFiles/splash2txt.dir/all' failed
>>> make[1]: *** [CMakeFiles/splash2txt.dir/all] Error 2
>>> Makefile:117: recipe for target 'all' failed
>>> make: *** [all] Error 2
>>>
>>> Imágenes integradas 1
>>>
>>>
>>> I hope you can help me.
>>>
>>> Thank you very much.
>>>
>>> Alex Estupiñán.
>>>
>>>
>>> 2016-08-02 6:34 GMT-05:00 Bussmann, Dr. Michael (FWKT) - 4167
>>> <m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>:
>>>
>>> Oops, sorry, you completed step 5 and can go to step 6. My bad!
>>>
>>> Am 02.08.2016 um 13:25 schrieb Bussmann, Dr. Michael (FWKT) -
>> 4167:
>>> > Dear Alex,
>>> >
>>> > As Axel pointed out in his E-mail, this is no error. It simply
>>> tells you
>>> > that a software component is missing that is optional, but not
>>> required
>>> > to build PIConGPU. This means PIConGPU can use ADIOS, but does
>> not
>>> need
>>> > it to run properly.
>>> >
>>> > Yes, this is a bit confusing, but as you see the output tells
>> you that
>>> > your build files have been written to /home/alex/src/picongpu.
>> So
>>> > everything is fine!
>>> >
>>> > You have now completed step 6 in the install process, see here:
>>> >
>>>
>> https://github.com/ComputationalRadiationPhysics/picongpu/blob/release-0.1.2/doc/INSTALL.md
>>>
>> <https://github.com/ComputationalRadiationPhysics/picongpu/blob/release-0.1.2/doc/INSTALL.md>
>>> >
>>> > As Axel also wrote, you can now simply go to step 7, typing
>> 'make'.
>>> >
>>> > If you run into problems, please provide error log files with
>> your
>>> > E-mails and keep posting to the Users mailing list.
>>> >
>>> > Hope this helps, Michael
>>> >
>>> > Am 02.08.2016 um 03:38 schrieb Alex Francisco:
>>> >> Dear Michael Bussmann:
>>> >>
>>> >> I hope you are well. I am a doctoral student at the University
>> of
>>> >> Colombia UIS. I am installing the PiconGpu program on my
>> laptop, my
>>> >> laptop has a software ubuntu 16.04 LTS 64-bit.
>>> >>
>>> >> My ubuntu terminal shows me the following error:
>>> >>
>>> >> -- Could NOT find ADIOS (missing: ADIOS_LIBRARIES
>>> ADIOS_INCLUDE_DIRS)
>>> >> (Required is at least version "1.6.0")
>>> >>
>>> >>
>>> >> Imágenes integradas 1
>>> >>
>>> >>
>>> >> the problem still, I am very interested in I can solve this
>>> problem. I
>>> >> need install this program for work in my doctoral job.
>>> >>
>>> >> I hope you can help me.
>>> >>
>>> >> Thank you very much.
>>> >>
>>> >> Alex Estupiñán.
>>> >>
>>> >
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--

Axel Huebl
Phone +49 351 260 3582
https://www.hzdr.de/crp
Computational Radiation Physics
Laser Particle Acceleration Division
Helmholtz-Zentrum Dresden - Rossendorf e.V.

Bautzner Landstrasse 400, 01328 Dresden
POB 510119, D-01314 Dresden
Vorstand: Prof. Dr.Dr.h.c. R. Sauerbrey
Prof. Dr.Dr.h.c. P. Joehnk
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