Return-Path: Received: from [149.220.60.110] (account huebl@hzdr.de [149.220.60.110] verified) by hzdr.de (CommuniGate Pro SMTP 6.1.10) with ESMTPSA id 14290209 for picongpu-users@hzdr.de; Thu, 16 Jun 2016 15:05:19 +0200 Subject: Re: splash2txt assert fail To: picongpu-users@hzdr.de References: From: "Huebl, Axel" X-Enigmail-Draft-Status: N1110 Message-ID: <9dcda0e1-c0fc-970e-83bc-f2a4f4bd8581@hzdr.de> Date: Thu, 16 Jun 2016 15:05:18 +0200 MIME-Version: 1.0 In-Reply-To: Content-Type: multipart/signed; protocol="application/pkcs7-signature"; micalg=sha-256; boundary="------------ms070802040205010608030805" This is a cryptographically signed message in MIME format. --------------ms070802040205010608030805 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi, looks odd. With --offset better set exactly the box size // 2 to get the middle of your simulation (e.g., L_z =3D 512 -> "--slice xy --offset 256"). Can you check if splash2txt --list --input-file h5_file_prefix works and if -d was selected correctly? It's likely you have to set the file prefix without the _timestep.h5 extension. Also, can you check what -v (verbose) prints with it? Modules loaded correctly? Axel On 16.06.2016 13:24, Khikhlukha Danila wrote: > Dear all, > Recently with 0.1.2 I observe a strange behavior of splash2txt. Likely > I'm misusing the tool, however I just want to confirm... >=20 > So my simulation was launched with an option " --hdf5.period 1000 > --hdf5.file simData". In the ouput directory I observe a bunch of files= =20 > simData_*.h5 with numeration starts from 0. > I want to plot Ey fieled sliced in xy direction @ step =3D 10000. I fou= nd > the example of how to use splash2txt here https://git.io/vo07M. I > modified it a bit and invoke the following: > splash2txt --slice xy -s 10000 -d fields/FieldE/y --offset 0 --delimite= r > " " --input-file simData >=20 > I got an array of data to stdout and in the end: > splash2txt: > /home/danila/tools/picongpu/src/tools/splash2txt/tools_splash_parallel.= cpp:200: > void ToolsSplashParallel::printFields(std::vector > [GPU:11444] *** Process received signal > *** = =20 >=20 > [GPU:11444] Signal: Aborted > (6) = =20 >=20 > [GPU:11444] Signal code:=20 > (-6) = =20 >=20 > [GPU:11444] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xf8d0 > [0x7fe3085468d0] =20 > [GPU:11444] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37) > [0x7fe3071f8067] =20 > [GPU:11444] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x148) > [0x7fe3071f9448] =20 > [GPU:11444] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x2e266) > [0x7fe3071f1266] =20 > [GPU:11444] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x2e312) > [0x7fe3071f1312] =20 > [GPU:11444] [ 5] > splash2txt(_ZN19ToolsSplashParallel11printFieldsESt6vectorI15ExDataCont= ainerSaIS1_EE+0x2b2) > [0x46e9fa] > [GPU:11444] [ 6] > splash2txt(_ZN19ToolsSplashParallel13convertToTextEv+0xa9a) > [0x46f638] =20 > [GPU:11444] [ 7] splash2txt(main+0x278) > [0x454597] = =20 >=20 > [GPU:11444] [ 8] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5= ) > [0x7fe3071e4b45] =20 > [GPU:11444] [ 9] splash2txt() > [0x452c2f] = =20 >=20 > [GPU:11444] *** End of error message > *** = =20 >=20 > Aborted = =20 >=20 >=20 > However I'm not sure that I'm using splash2txt correctly. Could you > please take a look? >=20 > Thank you in advance, > Danila. --=20 Axel Huebl Phone +49 351 260 3582 https://www.hzdr.de/crp Computational Radiation Physics Laser Particle Acceleration Division Helmholtz-Zentrum Dresden - Rossendorf e.V. Bautzner Landstrasse 400, 01328 Dresden POB 510119, D-01314 Dresden Vorstand: Prof. Dr.Dr.h.c. R. Sauerbrey Prof. Dr.Dr.h.c. P. 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