picongpu-users@hzdr.de Mailing List Archive

Hi Alex, Are you even on a cluster with a batch system? If yes, which one? PBS, Slurm, ...? Otherwise, use -s bash and the -t submit/bash/... "mpiexec"/"mpirun" bash .tpl file for locsl runs. Axel On August 28, 2016 12:38:37 AM CEST, Alex Francisco <djlexes@gmail.com> wrote: >Dear developers PicOnGpu: > >I install the program again and I already are creating the "bin" folder >in >the directory ~ / ParamSet / case001 > >alex@alex-Satellite-L635:~/paramSets/case001$ ls >bin cmakeFlags include lib share submit > > >When I execute the netx instructions, show me this: > >alex@alex-Satellite-L635:~/paramSets/case001$ tbg -s qsub -c >submit/0016gpus.cfg -t submit/hypnos/k20_profile.tpl ~/runs/testBatch01 > >/home/alex/src/picongpu/src/tools/bin/tbg: línea 354: qsub: orden no >encontrada > >alex@alex-Satellite-L635:~/runs/testBatch01$ >$PICSRC/configure >-i ~/paramSets/case002 ~/runs/testBatch01 >cmake command: cmake >-DCMAKE_INSTALL_PREFIX=/home/alex/paramSets/case002 >-DPIC_EXTENSION_PATH=/home/alex/runs/testBatch01 >/home/alex/src/picongpu >-- Building libSplash version 1.4.0 >-- Building RELEASE version >-- Parallel HDF5 found. Building parallel version >-- Building splashtools >-- Building splashtools parallel version >-- Configuring done >-- Generating done >-- Build files have been written to: /home/alex/src/picongpu > > >it is an error or that the order does not exist for the instructions of >tbg >or qsub "wrong Fingered". > >I hope can you help me, > >Thank you very much. > >Alex > >2016-08-10 3:35 GMT-05:00 Garten, Marco <m.garten@hzdr.de>: > >> Did you perhaps execute the $PICSRC/configure command inside your >> home/alex/src/picongpu before? That will create some files there and >will >> stop you >> from compiling correctly. >> >> First check if you have any changes in your source code: >> >> cd ~/src/picongpu >> >> git status >> >> --> Please show us the output of this >> >> If you have any modified or new files in there and NO intentional >changes >> you can do: >> >> git reset --hard HEAD >> >> That resets your local index and working tree to the state of the >branch >> as it was when you downloaded it. (Careful: it will also delete your >> changes >> if you made some) >> >> Now you can retry building PIConGPU again: >> >> rm -r ~/build/* >> >> cd ~/build >> >> $PICSRC/configure ~/paramSets/case001 >> >> make -j install >> (please only do the make command inside the build directory >> - if the configure command writes to any other directory than build >> that is a sign that something went wrong) >> >> --> Please send us all the output until there again >> >> Best, >> >> Marco >> >> Am Tue, 9 Aug 2016 16:50:05 -0500 schrieb Alex Francisco < >> djlexes@gmail.com>: >> >>> alex@alex-Satellite-L635:~/src/picongpu$ ./configure >~/paramSets/case001 >>> cmake command: cmake -DCUDA_ARCH=sm_20 >>> -DCMAKE_INSTALL_PREFIX=/home/alex/paramSets/case001 >>> -DPIC_EXTENSION_PATH=/home/alex/paramSets/case001 . >>> -- Building Debug >>> -- libSplash supports PARALLEL output >>> -- libSplash compiler definitions: >>> >-D_LARGEFILE_SOURCE;-D_LARGEFILE64_SOURCE;-D_BSD_SOURCE;-DENABLE_HDF5=1 >>> -- Found 'adios_config': /usr/bin/adios_config >>> /usr/bin/adios_config: línea 121: pkgconfig: orden no encontrada >>> -- The directory provided by 'adios_config -d' does not exist: >>> -- Could NOT find ADIOS (missing: ADIOS_LIBRARIES >ADIOS_INCLUDE_DIRS) >>> (Required is at least version "1.6.0") >>> -- Boost version: 1.55.0 >>> -- Found the following Boost libraries: >>> -- program_options >>> -- regex >>> -- Configuring done >>> -- Generating done >>> -- Build files have been written to: /home/alex/src/picongpu >>> >>> alex@alex-Satellite-L635:~/src/picongpu$ make -j >>> [100%] Built target splash2txt >>> >>> alex@alex-Satellite-L635:~/src/picongpu$ make install >>> [100%] Built target splash2txt >>> Install the project... >>> -- Install configuration: "Debug" >>> -- Up-to-date: /home/alex/paramSets/case001/./splash2txt >>> >>> alex@alex-Satellite-L635:~/src/picongpu$ cd ~/paramSets/case001/ >>> >>> alex@alex-Satellite-L635:~/paramSets/case001$ ls >>> cmakeFlags include splash2txt submit >>> >>> >>> >>> >>> 2016-08-09 16:37 GMT-05:00 Alex Francisco <djlexes@gmail.com>: >>> >>> alex@alex-Satellite-L635:~/build$ make -j install >>>> make: *** No rule to make target 'install'. Alto. >>>> alex@alex-Satellite-L635:~/build$ make -j >>>> make: *** No se especificó ningún objetivo y no se encontró ningún >>>> makefile. Alto. >>>> >>>> >>>> 2016-08-09 16:35 GMT-05:00 Alex Francisco <djlexes@gmail.com>: >>>> >>>> alex@alex-Satellite-L635:~/build$ ~/src/picongpu/./configure >>>>> ~/paramSets/case001/ >>>>> cmake command: cmake -DCUDA_ARCH=sm_20 >-DCMAKE_INSTALL_PREFIX=/home/a >>>>> lex/paramSets/case001/ >>>>> -DPIC_EXTENSION_PATH=/home/alex/paramSets/case001/ >>>>> /home/alex/src/picongpu/. >>>>> -- Building Debug >>>>> -- libSplash supports PARALLEL output >>>>> -- libSplash compiler definitions: -D_LARGEFILE_SOURCE;-D_LARGEFI >>>>> LE64_SOURCE;-D_BSD_SOURCE;-DENABLE_HDF5=1 >>>>> -- Found 'adios_config': /usr/bin/adios_config >>>>> /usr/bin/adios_config: línea 121: pkgconfig: orden no encontrada >>>>> -- The directory provided by 'adios_config -d' does not exist: >>>>> -- Could NOT find ADIOS (missing: ADIOS_LIBRARIES >ADIOS_INCLUDE_DIRS) >>>>> (Required is at least version "1.6.0") >>>>> -- Boost version: 1.55.0 >>>>> -- Found the following Boost libraries: >>>>> -- program_options >>>>> -- regex >>>>> -- Configuring done >>>>> -- Generating done >>>>> CMake Warning: >>>>> Manually-specified variables were not used by the project: >>>>> >>>>> PIC_EXTENSION_PATH >>>>> >>>>> >>>>> -- Build files have been written to: /home/alex/src/picongpu >>>>> alex@alex-Satellite-L635:~/build$ make -j intall >>>>> make: *** No rule to make target 'intall'. Alto. >>>>> alex@alex-Satellite-L635:~/build$ >>>>> >>>>> >>>>> >>>>> 2016-08-09 16:17 GMT-05:00 Marco Garten <m.garten@hzdr.de>: >>>>> >>>>> This still looks like as if your compile process has not been >successful >>>>>> and the executable has not been built (nor has the bin folder >been >>>>>> created). >>>>>> >>>>>> Could you please remove all the contents inside the ~/build >directory, >>>>>> repeat the following steps and show us all the output from your >>>>>> terminal? >>>>>> >>>>>> 1. Configure the example (cd ~/build && $PICSRC/configure >>>>>> ~/paramSets/case001) >>>>>> >>>>>> 2. Compile the code (make -j install) >>>>>> >>>>>> Hope we can get your code running soon! >>>>>> >>>>>> Best, >>>>>> >>>>>> Marco >>>>>> >>>>>> >>>>>> >>>>>> Am 09.08.2016 um 22:34 schrieb Alex Francisco: >>>>>> > When I execute this line|: | >>>>>> > tbg -s qsub -c ~/paramSets/case001/submit/0016gpus.cfg -t >>>>>> > ~/paramSets/case001/submit/hypnos/k20_profile.tpl >~/runs/testBatch01 >>>>>> > >>>>>> > Show me this in my terminal: >>>>>> > >>>>>> > alex@alex-Satellite-L635:~/paramSets/case001$ tbg -s qsub -c >>>>>> > ~/paramSets/case001/submit/0016gpus.cfg -t >>>>>> > ~/paramSets/case001/submit/hypnos/k20_profile.tpl >~/runs/testBatch01 >>>>>> > >>>>>> > cp: no se puede efectuar `stat' sobre >>>>>> > «/home/alex/paramSets/case001/bin»: No existe el archivo o el >>>>>> directorio >>>>>> > /home/alex/src/picongpu/src/tools/bin/tbg: línea 354: qsub: >orden no >>>>>> > encontrada >>>>>> > >>>>>> > thank you very much, >>>>>> > I hope you can help me, >>>>>> > >>>>>> > Alex. >>>>>> > >>>>>> > 2016-08-09 13:36 GMT-05:00 Huebl, Axel <a.huebl@hzdr.de >>>>>> > <mailto:a.huebl@hzdr.de>>: >>>>>> > >>>>>> > Your simulation has not yet run. >>>>>> > >>>>>> > Please check the output of the "tbg" command, the "queue" >of your >>>>>> batch >>>>>> > system, etc. >>>>>> > >>>>>> > if it would have run, a "simOutput" dir would exist in the >>>>>> directory you >>>>>> > listed. >>>>>> > >>>>>> > >>>>>> > Best, >>>>>> > Axel >>>>>> > >>>>>> > On 09.08.2016 12:49, Alex Francisco wrote: >>>>>> > > which is the output of the example simulation "Laser >>>>>> Wakefield"?,. >>>>>> > > >>>>>> > > I can see is this in my folder ~/runs/testBatch01: >>>>>> > > >>>>>> > > alex@alex-Satellite-L635:~/runs/testBatch01$ ls >>>>>> > > picongpu tbg >>>>>> > > >>>>>> > > Thank you very much >>>>>> > > >>>>>> > > Alex. >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> > > 2016-08-09 11:27 GMT-05:00 René Widera <r.widera@hzdr.de >>>>>> > <mailto:r.widera@hzdr.de> >>>>>> > > <mailto:r.widera@hzdr.de <mailto:r.widera@hzdr.de>>>: >>>>>> > > >>>>>> > > Dear Alex, >>>>>> > > >>>>>> > > `make install` for splash2txt copies the binary to >the >>>>>> folder >>>>>> > > defined in `CMAKE_INSTALL_PREFIX`. >>>>>> > > It not creates a `bin` folder. >>>>>> > > >>>>>> > > René >>>>>> > > >>>>>> > > On 09.08.2016 17:48, Alex Francisco wrote: >>>>>> > > >>>>>> > > When I execute: |make install, ||it is not >copying the >>>>>> > binaries >>>>>> > > /bin to >>>>>> > > this folder, | >>>>>> > > >>>>>> > > alex@alex-Satellite-L635:~/paramSets/case001$ ls >>>>>> > > cmakeFlags include splash2txt submit >>>>>> > > >>>>>> > > also when I am in the folder ~/src/picongpu, show >me >>>>>> this, >>>>>> > when I >>>>>> > > execute cmake -L: >>>>>> > > >>>>>> > > alex@alex-Satellite-L635:~/src/picongpu$ cmake -L >>>>>> > > *CMake Error: The source >>>>>> > > "/home/alex/src/picongpu/CMakeLists.txt" does >>>>>> > > not match the source >>>>>> > > "/home/alex/src/picongpu/src/ >>>>>> tools/splash2txt/CMakeLists.txt" >>>>>> > > used to >>>>>> > > generate cache. Re-run cmake with a different >source >>>>>> > directory.* >>>>>> > > -- Cache values >>>>>> > > ADIOS_CONFIG:FILEPATH=/usr/bin/adios_config >>>>>> > > CMAKE_BUILD_TYPE:STRING=Debug >>>>>> > > >CMAKE_INSTALL_PREFIX:PATH=/home/alex/paramSets/case001 >>>>>> > > HDF5_DIR:PATH=HDF5_DIR-NOTFOUND >>>>>> > > >>>>>> > >MPI_EXTRA_LIBRARY:STRING=/usr/lib/libmpi.so;/usr/lib/x86_64- >>>>>> linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so >>>>>> > > MPI_LIBRARY:FILEPATH=/usr/lib/libmpi_cxx.so >>>>>> > > >>>>>> > >Splash_LIBRARIES:FILEPATH=/home/alex/lib/splash/lib/libsplash.a >>>>>> > > Splash_ROOT_DIR:PATH=/home/alex/lib/splash >>>>>> > > >>>>>> > > >>>>>> > > 2016-08-08 15:41 GMT-05:00 Marco Garten < >>>>>> m.garten@hzdr.de >>>>>> > <mailto:m.garten@hzdr.de> >>>>>> > > <mailto:m.garten@hzdr.de ><mailto:m.garten@hzdr.de>> >>>>>> > > <mailto:m.garten@hzdr.de ><mailto:m.garten@hzdr.de> >>>>>> > <mailto:m.garten@hzdr.de <mailto:m.garten@hzdr.de>>>>: >>>>>> > > >>>>>> > > >>>>>> > > Dear Alex, >>>>>> > > >>>>>> > > the TBG command as you executed it uses the >>>>>> relative >>>>>> path >>>>>> > > from inside >>>>>> > > your paramSet. The config file is located >inside >>>>>> > > ~/paramSets/case001/submit - just like the >hardware >>>>>> > template >>>>>> > > file >>>>>> > > k20_profile.tpl is in >>>>>> ~/paramSets/case001/submit/hyp >>>>>> nos/. >>>>>> > > So either execute the command from >>>>>> ~/paramSets/case001 or >>>>>> > > use the >>>>>> > > absolute path. >>>>>> > > >>>>>> > > Don't forget to delete the folder >>>>>> ~/runs/testBatch01/ >>>>>> > before >>>>>> > > because >>>>>> > > otherwise TBG will tell you that the job name >is >>>>>> > already in >>>>>> > > use. (The >>>>>> > > run folders all contain a copy of the >executable >>>>>> and >>>>>> the >>>>>> > > parameter set >>>>>> > > regardless if the job is running or not) >>>>>> > > >>>>>> > > You seem to be using the config files and the >>>>>> architecture >>>>>> > > template of >>>>>> > > our home cluster on your local machine, >though. >>>>>> That >>>>>> would >>>>>> > > require you >>>>>> > > to have 16 GPUs if you use the 0016gpus.cfg >file. >>>>>> If >>>>>> you >>>>>> > > want to do a >>>>>> > > quick test whether the code is running at all >you >>>>>> can just >>>>>> > > execute: >>>>>> > > >>>>>> > > cd ~/paramSets/case001/bin >>>>>> > > >>>>>> > > ./picongpu -d 1 1 1 -g 64 128 64 -s 1000 >>>>>> > > >>>>>> > > This will run the code with one GPU on a grid >of >>>>>> 64 x >>>>>> > 128 x >>>>>> > > 64 cells for >>>>>> > > 1000 steps. >>>>>> > > Please look at any of the *gpus.cfg files for >>>>>> additional >>>>>> > > options to the >>>>>> > > command that will generate output. I would >>>>>> recommend >>>>>> > > something like: >>>>>> > > >>>>>> > > --png_e.period 50 --png_e.axis yz >>>>>> --png_e.slicePoint >>>>>> 0.5 >>>>>> > > --png_e.folder >>>>>> > > pngElectronsYZ --elec_cnt.period 50 >>>>>> > > >>>>>> > > This will give you the total count of >electrons in >>>>>> the >>>>>> > > simulation at >>>>>> > > every 50th time step and also a PNG showing a >YZ >>>>>> slice of >>>>>> > > the electron >>>>>> > > charge density. The output will now be >created >>>>>> directly in >>>>>> > > the "bin" >>>>>> > > folder where your executable is. >>>>>> > > >>>>>> > > Hope this works for you! >>>>>> > > >>>>>> > > Best, >>>>>> > > >>>>>> > > Marco >>>>>> > > >>>>>> > > Am 08.08.2016 um 18:14 schrieb Alex >Francisco: >>>>>> > > > Thank you very much this worked!!! >>>>>> > > > >>>>>> > > > When I do execute this line of code in my >>>>>> terminal >>>>>> > show this: >>>>>> > > > >>>>>> > > > alex@alex-Satellite-L635:~/src/picongpu$ >tbg -s >>>>>> qsub -c >>>>>> > > > submit/0016gpus.cfg -t >>>>>> > > ~/paramSets/case001/submit/hypnos/k20_profile.tpl >>>>>> > > > ~/runs/testBatch01/ >>>>>> > > > >>>>>> > > > The given cfg file "submit/0016gpus.cfg" >does not >>>>>> exist >>>>>> > > (-c|--cfg). >>>>>> > > > >>>>>> > > > >>>>>> > > > However, I turn to the folder case001 and >there >>>>>> show me >>>>>> > > the folder >>>>>> > > > testBatch01, I ask to yours, if it can be >showing >>>>>> me >>>>>> > this >>>>>> > > because I once >>>>>> > > > create and do not need to recreate the >subfolder >>>>>> > > (testBatch01) ?? >>>>>> > > > >>>>>> > > > alex@alex-Satellite-L635:~/runs$ ls >>>>>> > > > testBatch01 >>>>>> > > > >>>>>> > > > and in the folder testBatch01 show me this >files: >>>>>> > > > >>>>>> > > > >alex@alex-Satellite-L635:~/runs/testBatch01$ ls >>>>>> > > > picongpu tbg >>>>>> > > > >>>>>> > > > >>>>>> > > > Furthermore, as I view the simulation >output? >>>>>> > > > >>>>>> > > > >>>>>> > > > I hope you can help me. >>>>>> > > > >>>>>> > > > Thank you very much. >>>>>> > > > >>>>>> > > > Alex Estupiñán. >>>>>> > > > >>>>>> > > > >>>>>> > > > 2016-08-06 11:33 GMT-05:00 Huebl, Axel >>>>>> > <a.huebl@hzdr.de <mailto:a.huebl@hzdr.de> >>>>>> > > <mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>> >>>>>> > <mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de> >>>>>> > > <mailto:a.huebl@hzdr.de ><mailto:a.huebl@hzdr.de>>> >>>>>> > > > <mailto:a.huebl@hzdr.de ><mailto:a.huebl@hzdr.de >>>>>> > >>>>>> > <mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>> >>>>>> > > <mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de> >>>>>> > <mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>>>>>: >>>>>> > > > >>>>>> > > > I also fixed that compile problem in >>>>>> splash2txt >>>>>> > by now. >>>>>> > > > >>>>>> > > > >>>>>> > > >>>>>> > > >>>>>> > >>https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545>> >>>>>> > > >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545>>> >>>>>> > > > >>>>>> > > >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> pull/1545 >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> pull/1545> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545>> >>>>>> > > >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545 ><https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>>> ull/1545>>>> >>>>>> > > > >>>>>> > > > You can just remove or comment out via >"//" >>>>>> the line >>>>>> > > that is causing the >>>>>> > > > error. >>>>>> > > > >>>>>> > > > >>>>>> > > > Axel >>>>>> > > > >>>>>> > > > On 06.08.2016 11:07, Axel Huebl wrote: >>>>>> > > > > Dear Alex, >>>>>> > > > > >>>>>> > > > > You don't need to build the helper >tool in >>>>>> > > post-processing, >>>>>> > > > splash2txt for now. Just skip step 6. >>>>>> > > > > >>>>>> > > > > Otherwise: please make sure the >source code >>>>>> is >>>>>> > > unmodified. For >>>>>> > > > compile errors, please report compiler >>>>>> version, >>>>>> > cmake >>>>>> > > version, cmake >>>>>> > > > -L . output and ubuntu version. >>>>>> > > > > >>>>>> > > > > Compile issues are also best tracked >in our >>>>>> github >>>>>> > > since we can >>>>>> > > > assign, track, link and archive it >there. >>>>>> > > > > >>>>>> > > > > Axel >>>>>> > > > > >>>>>> > > > > On August 6, 2016 10:56:09 AM EDT, >>>>>> "Bussmann, Dr. >>>>>> > > Michael (FWKT) - >>>>>> > > > 4167" <m.bussmann@hzdr.de >>>>>> > <mailto:m.bussmann@hzdr.de> <mailto:m.bussmann@hzdr.de >>>>>> > <mailto:m.bussmann@hzdr.de>> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>> >>>>>> > > <mailto:m.bussmann@hzdr.de <mailto: >>>>>> m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>>> >>>>>> wrote: >>>>>> > > > >> Dear Alex, >>>>>> > > > >> >>>>>> > > > >> Could you please tell us which >version of >>>>>> > PIConGPU >>>>>> > > you are >>>>>> > > using, >>>>>> > > > >> provide CMake log files and >>>>>> CMakeLists.txt >>>>>> so we >>>>>> > > can have >>>>>> > > a look at >>>>>> > > > >> what >>>>>> > > > >> is going on. >>>>>> > > > >> >>>>>> > > > >> Best, Michael >>>>>> > > > >> >>>>>> > > > >> Am 05.08.2016 um 18:13 schrieb Alex >>>>>> Francisco: >>>>>> > > > >>> Dear Michael Bussmann and picongpu >>>>>> users: >>>>>> > > > >>> >>>>>> > > > >>> I appreciate your help, I already >>>>>> > understood that >>>>>> > > ADIOS >>>>>> > > is optional, >>>>>> > > > >> but >>>>>> > > > >>> when i continue, my ubuntu >terminal show >>>>>> > me, the >>>>>> > > following error, >>>>>> > > > >> when I >>>>>> > > > >>> execute the step 6 "make -j": >>>>>> > > > >>> >>>>>> > > > >>> [ 50%] Building CXX object >>>>>> > > > >CMakeFiles/splash2txt.dir/splash2txt.cpp.o >>>>>> > > > >>> >>>>>> > > >>>>>> > >/home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp: In >>>>>> > > > >> function >>>>>> > > > >>> ‘bool parseOptions(int, char**, >>>>>> > ProgramOptions&)’: >>>>>> > > > >>> >>>>>> > > >>>>>> > > >>>>>> > >/home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp: >>>>>> 164:24: >>>>>> > > > >>> error: ‘desc’ was not declared in >this >>>>>> scope >>>>>> > > > >>> errorStream << desc << >"\n"; >>>>>> > > > >>> ^ >>>>>> > > > >>> CMakeFiles/splash2txt.dir/buil >>>>>> d.make:54: >>>>>> recipe >>>>>> > > for target >>>>>> > > > >>> >>>>>> > 'CMakeFiles/splash2txt.dir/splash2txt.cpp.o' failed >>>>>> > > > >>> make[2]: *** >>>>>> > > [CMakeFiles/splash2txt.dir/splash2txt.cpp.o] >>>>>> > > Error 1 >>>>>> > > > >>> CMakeFiles/Makefile2:60: recipe >for >>>>>> target >>>>>> > > > >>> 'CMakeFiles/splash2txt.dir/all' >failed >>>>>> > > > >>> make[1]: *** >>>>>> > [CMakeFiles/splash2txt.dir/all] Error 2 >>>>>> > > > >>> Makefile:117: recipe for target >'all' >>>>>> failed >>>>>> > > > >>> make: *** [all] Error 2 >>>>>> > > > >>> >>>>>> > > > >>> Imágenes integradas 1 >>>>>> > > > >>> >>>>>> > > > >>> >>>>>> > > > >>> I hope you can help me. >>>>>> > > > >>> >>>>>> > > > >>> Thank you very much. >>>>>> > > > >>> >>>>>> > > > >>> Alex Estupiñán. >>>>>> > > > >>> >>>>>> > > > >>> >>>>>> > > > >>> 2016-08-02 6:34 GMT-05:00 >Bussmann, Dr. >>>>>> Michael >>>>>> > > (FWKT) - 4167 >>>>>> > > > >>> <m.bussmann@hzdr.de >>>>>> > <mailto:m.bussmann@hzdr.de> <mailto:m.bussmann@hzdr.de >>>>>> > <mailto:m.bussmann@hzdr.de>> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>> >>>>>> > > <mailto:m.bussmann@hzdr.de <mailto: >>>>>> m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>> >>>>>> > > > <mailto:m.bussmann@hzdr.de >>>>>> > <mailto:m.bussmann@hzdr.de> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de >>>>>> >> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de >>>>>> >>> >>>>>> > > <mailto:m.bussmann@hzdr.de <mailto: >>>>>> m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>> >>>>>> > > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de> >>>>>> > <mailto:m.bussmann@hzdr.de ><mailto:m.bussmann@hzdr.de>>>>>>: >>>>>> > > > >>> >>>>>> > > > >>> Oops, sorry, you completed >step 5 >>>>>> and >>>>>> > can go >>>>>> > > to step >>>>>> > > 6. My bad! >>>>>> > > > >>> >>>>>> > > > >>> Am 02.08.2016 um 13:25 schrieb >>>>>> > Bussmann, Dr. >>>>>> > > Michael >>>>>> > > (FWKT) - >>>>>> > > > >> 4167: >>>>>> > > > >>> > Dear Alex, >>>>>> > > > >>> > >>>>>> > > > >>> > As Axel pointed out in his >E-mail, >>>>>> > this is no >>>>>> > > error. It simply >>>>>> > > > >>> tells you >>>>>> > > > >>> > that a software component is >>>>>> missing >>>>>> > that is >>>>>> > > optional, but not >>>>>> > > > >>> required >>>>>> > > > >>> > to build PIConGPU. This >means >>>>>> > PIConGPU can use >>>>>> > > ADIOS, but does >>>>>> > > > >> not >>>>>> > > > >>> need >>>>>> > > > >>> > it to run properly. >>>>>> > > > >>> > >>>>>> > > > >>> > Yes, this is a bit >confusing, but >>>>>> as you >>>>>> > > see the >>>>>> > > output tells >>>>>> > > > >> you that >>>>>> > > > >>> > your build files have been >written >>>>>> to >>>>>> > > /home/alex/src/picongpu. >>>>>> > > > >> So >>>>>> > > > >>> > everything is fine! >>>>>> > > > >>> > >>>>>> > > > >>> > You have now completed step >6 in >>>>>> the >>>>>> > install >>>>>> > > process, see >>>>>> > > > here: >>>>>> > > > >>> > >>>>>> > > > >>> >>>>>> > > > >> >>>>>> > > > >>>>>> > > >>>>>> > > >>>>>> > >https://github.com/ComputationalRadiationPhysics/picongpu/bl >>>>>> ob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>>> > > >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>>> >>>>>> > > > >>>>>> > > >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>>>> >>>>>> > > > >>> >>>>>> > > > >> >>>>>> > > > >>>>>> > > >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>>> >>>>>> > > > >>>>>> > > >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md> >>>>>> > > >>>>>> > ><https://github.com/ComputationalRadiationPhysics/picongpu/b >>>>>> lob/release-0.1.2/doc/INSTALL.md >>>>>> > <https://github.com/ComputationalRadiationPhysics/picongpu/ >>>>>> blob/release-0.1.2/doc/INSTALL.md>>>>> >>>>>> > > > >>> > >>>>>> > > > >>> > As Axel also wrote, you can >now >>>>>> simply go >>>>>> > > to step >>>>>> > > 7, typing >>>>>> > > > >> 'make'. >>>>>> > > > >>> > >>>>>> > > > >>> > If you run into problems, >please >>>>>> provide >>>>>> > > error log >>>>>> > > files with >>>>>> > > > >> your >>>>>> > > > >>> > E-mails and keep posting to >the >>>>>> Users >>>>>> > > mailing list. >>>>>> > > > >>> > >>>>>> > > > >>> > Hope this helps, Michael >>>>>> > > > >>> > >>>>>> > > > >>> > Am 02.08.2016 um 03:38 >schrieb >>>>>> Alex >>>>>> > Francisco: >>>>>> > > > >>> >> Dear Michael Bussmann: >>>>>> > > > >>> >> >>>>>> > > > >>> >> I hope you are well. I am a >>>>>> doctoral >>>>>> > > student at the >>>>>> > > > University >>>>>> > > > >> of >>>>>> > > > >>> >> Colombia UIS. I am >installing the >>>>>> > PiconGpu >>>>>> > > program >>>>>> > > on my >>>>>> > > > >> laptop, my >>>>>> > > > >>> >> laptop has a software >ubuntu >>>>>> 16.04 >>>>>> > LTS 64-bit. >>>>>> > > > >>> >> >>>>>> > > > >>> >> My ubuntu terminal shows me >the >>>>>> > following >>>>>> > > error: >>>>>> > > > >>> >> >>>>>> > > > >>> >> -- Could NOT find ADIOS >(missing: >>>>>> > > ADIOS_LIBRARIES >>>>>> > > > >>> ADIOS_INCLUDE_DIRS) >>>>>> > > > >>> >> (Required is at least >version >>>>>> "1.6.0") >>>>>> > > > >>> >> >>>>>> > > > >>> >> >>>>>> > > > >>> >> Imágenes integradas 1 >>>>>> > > > >>> >> >>>>>> > > > >>> >> >>>>>> > > > >>> >> the problem still, I am >very >>>>>> > interested in >>>>>> > > I can >>>>>> > > solve this >>>>>> > > > >>> problem. I >>>>>> > > > >>> >> need install this program >for >>>>>> work >>>>>> in my >>>>>> > > doctoral job. >>>>>> > > > >>> >> >>>>>> > > > >>> >> I hope you can help me. >>>>>> > > > >>> >> >>>>>> > > > >>> >> Thank you very much. >>>>>> > > > >>> >> >>>>>> > > > >>> >> Alex Estupiñán. >>>>>> > > > >>> >> >>>>>> > > > >>> > >>>>>> > > > >>> > >>>>>> > > >>>>>> > >############################################################# >>>>>> > > > >>> > This message is sent to you >>>>>> because >>>>>> > you are >>>>>> > > subscribed to >>>>>> > > > >>> > the mailing list >>>>>> > <picongpu-users@hzdr.de <mailto:picongpu-users@hzdr.de> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> ><mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>>> >>>>>> > > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>> ><mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>>>> >>>>>> > > > >>> <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> ><mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>>> >>>>>> > > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>> ><mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de> >>>>>> > > <mailto:picongpu-users@hzdr.de >>>>>> > <mailto:picongpu-users@hzdr.de>>>>>>. >>>>>> > > > >>> > To unsubscribe, E-mail to: >>>>>> > > <picongpu-users-off@hzdr.de >>>>>> > <mailto:picongpu-users-off@hzdr.de> >>>>>> 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<mailto:picongpu-users-index@hzdr.de> >>>>>> > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de>> >>>>>> > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de> >>>>>> > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de>>> >>>>>> > > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de> >>>>>> > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de>> >>>>>> > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de> >>>>>> > > <mailto:picongpu-users-index@hzdr.de >>>>>> > <mailto:picongpu-users-index@hzdr.de>>>>>> >>>>>> > > > >>> > Send administrative queries >to >>>>>> > > > <picongpu-users-request@hzdr.de >>>>>> > <mailto:picongpu-users-request@hzdr.de> >>>>>> > > <mailto:picongpu-users-request@hzdr.de >>>>>> > <mailto:picongpu-users-request@hzdr.de>> >>>>>> > > 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<mailto:picongpu-users-request@hzdr.de>>> >>>>>> > > > <mailto:picongpu-users-request@hzdr.de >>>>>> > <mailto:picongpu-users-request@hzdr.de> >>>>>> > > <mailto:picongpu-users-request@hzdr.de >>>>> >>>>>