Return-Path: Received: from mx2.fz-rossendorf.de ([149.220.142.12] verified) by hzdr.de (CommuniGate Pro SMTP 6.1.11) with ESMTP id 14241035 for picongpu-users@cg.hzdr.de; Sun, 28 Aug 2016 00:38:51 +0200 Received: from localhost (localhost [127.0.0.1]) by mx2.fz-rossendorf.de (Postfix) with ESMTP id EB366459C2 for ; Sun, 28 Aug 2016 00:38:51 +0200 (CEST) X-Virus-Scanned: Debian amavisd-new at mx2.fz-rossendorf.de Authentication-Results: mx2.fz-rossendorf.de (amavisd-new); dkim=pass (2048-bit key) header.d=gmail.com Received: from mx2.fz-rossendorf.de ([127.0.0.1]) by localhost (mx2.fz-rossendorf.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id 72vjDYW6XxpT for ; Sun, 28 Aug 2016 00:38:41 +0200 (CEST) Received-SPF: Pass (sender SPF authorized) identity=mailfrom; client-ip=209.85.161.179; helo=mail-yw0-f179.google.com; envelope-from=djlexes@gmail.com; receiver=picongpu-users@hzdr.de Received: from mail-yw0-f179.google.com (mail-yw0-f179.google.com [209.85.161.179]) by mx2.fz-rossendorf.de (Postfix) with ESMTPS id 13868451D0 for ; Sun, 28 Aug 2016 00:38:40 +0200 (CEST) Received: by mail-yw0-f179.google.com with SMTP id u134so67836476ywg.3 for ; Sat, 27 Aug 2016 15:38:40 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:in-reply-to:references:from:date:message-id:subject:to; bh=WPZ/ffOAl5NNvEOQShrnMq/yBUO6yzWzRdDCD+OiABE=; b=vd3PGaPZcDFxIr5R/Ax3AEezPRzbOBTSUM8uCAhFJgSiZLrNdDh3i5y2SKnyf85F2I lYRu+BHUEVNR2v7A0JcalmbwJekxj4bhfN24VSKqVrm67ixPwwnhsxs2qEqLeL8Y6djn Cvj/MY7dtDLTyNI78PP6hGiSCT15CWvTN1gxyZlxOzgTSMI6RvuyRLFAfgR60p6gGRLb mM1Iy4m+V5I/IhXLmD3S9NOwifbApP4Aykq0jR1EkphWfbYsr42Uh/LenamLQAWf9u/X yjZwfRdyndAwEtN9iIbvgGcis2vY5gK3dfm4TvnCY8QI/KHaa5aZLj/1TBNEBHXvgqCT ePkw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:mime-version:in-reply-to:references:from:date :message-id:subject:to; bh=WPZ/ffOAl5NNvEOQShrnMq/yBUO6yzWzRdDCD+OiABE=; b=bw5uOJhzyq8vyA0dZOcTa+Rf2tpm8ytKBhu3Ax5IUXwsoXysP+Nz6mOr5IKZ1vUKqr 2Ivc5vveOa1A7AfJh8I2cVqgt08GAcKMiXk8thFSadGkUt3FcxnKUTNktx8a2xB1izdv h6hFCegTN01lBLeSrcDFZNxvtnH2VA/4fFwggSaxtsgLKE5OasV7EjbbQv+dl2YvmXvx IwP3E59haw+LOeS5pSgklc2a9AgArfIDVNkprAt9PO6eu3OEFOb05jCsgFDCQcBZ6uws 7AFGGLjCr43i9ZzOcKrHeK20L+GhbdV4UsaDBlz9vUbYY9yihnflTa43ntAQKo8X4yN1 9o5g== X-Gm-Message-State: AE9vXwMMCJcwXei12uYrfG/BejfY+/E7N9L2ZJgtkD5vmLtwh851rdCjhqlCeDE5ay90thBq+NBp1Ol9a/qXfQ== X-Received: by 10.13.216.150 with SMTP id a144mr9295669ywe.147.1472337519033; Sat, 27 Aug 2016 15:38:39 -0700 (PDT) MIME-Version: 1.0 Received: by 10.13.227.4 with HTTP; Sat, 27 Aug 2016 15:38:37 -0700 (PDT) In-Reply-To: References: From: Alex Francisco Date: Sat, 27 Aug 2016 17:38:37 -0500 Message-ID: Subject: Re: [PIConGPU-Users] [PIConGPU-Users] [PIConGPU-Users] [PIConGPU-Users] [PIConGPU-Users] [PIConGPU-Users] [PIConGPU-Users] Running PIConGPU via tbg To: picongpu-users@hzdr.de Content-Type: multipart/alternative; boundary=001a114e4368cfc899053b154af9 --001a114e4368cfc899053b154af9 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Dear developers PicOnGpu: I install the program again and I already are creating the "bin" folder in the directory ~ / ParamSet / case001 alex@alex-Satellite-L635:~/paramSets/case001$ ls bin cmakeFlags include lib share submit When I execute the netx instructions, show me this: alex@alex-Satellite-L635:~/paramSets/case001$ tbg -s qsub -c submit/0016gpus.cfg -t submit/hypnos/k20_profile.tpl ~/runs/testBatch01 /home/alex/src/picongpu/src/tools/bin/tbg: l=C3=ADnea 354: qsub: orden no encontrada alex@alex-Satellite-L635:~/runs/testBatch01$ $PICSRC/configure -i ~/paramSets/case002 ~/runs/testBatch01 cmake command: cmake -DCMAKE_INSTALL_PREFIX=3D/home/alex/paramSets/case002 -DPIC_EXTENSION_PATH=3D/home/alex/runs/testBatch01 /home/alex/src/picongp= u -- Building libSplash version 1.4.0 -- Building RELEASE version -- Parallel HDF5 found. Building parallel version -- Building splashtools -- Building splashtools parallel version -- Configuring done -- Generating done -- Build files have been written to: /home/alex/src/picongpu it is an error or that the order does not exist for the instructions of tbg or qsub "wrong Fingered". I hope can you help me, Thank you very much. Alex 2016-08-10 3:35 GMT-05:00 Garten, Marco : > Did you perhaps execute the $PICSRC/configure command inside your > home/alex/src/picongpu before? That will create some files there and will > stop you > from compiling correctly. > > First check if you have any changes in your source code: > > cd ~/src/picongpu > > git status > > --> Please show us the output of this > > If you have any modified or new files in there and NO intentional changes > you can do: > > git reset --hard HEAD > > That resets your local index and working tree to the state of the branch > as it was when you downloaded it. (Careful: it will also delete your > changes > if you made some) > > Now you can retry building PIConGPU again: > > rm -r ~/build/* > > cd ~/build > > $PICSRC/configure ~/paramSets/case001 > > make -j install > (please only do the make command inside the build directory > - if the configure command writes to any other directory than build > that is a sign that something went wrong) > > --> Please send us all the output until there again > > Best, > > Marco > > Am Tue, 9 Aug 2016 16:50:05 -0500 schrieb Alex Francisco < > djlexes@gmail.com>: > >> alex@alex-Satellite-L635:~/src/picongpu$ ./configure ~/paramSets/case001 >> cmake command: cmake -DCUDA_ARCH=3Dsm_20 >> -DCMAKE_INSTALL_PREFIX=3D/home/alex/paramSets/case001 >> -DPIC_EXTENSION_PATH=3D/home/alex/paramSets/case001 . >> -- Building Debug >> -- libSplash supports PARALLEL output >> -- libSplash compiler definitions: >> -D_LARGEFILE_SOURCE;-D_LARGEFILE64_SOURCE;-D_BSD_SOURCE;-DENABLE_HDF5=3D= 1 >> -- Found 'adios_config': /usr/bin/adios_config >> /usr/bin/adios_config: l=C3=ADnea 121: pkgconfig: orden no encontrada >> -- The directory provided by 'adios_config -d' does not exist: >> -- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) >> (Required is at least version "1.6.0") >> -- Boost version: 1.55.0 >> -- Found the following Boost libraries: >> -- program_options >> -- regex >> -- Configuring done >> -- Generating done >> -- Build files have been written to: /home/alex/src/picongpu >> >> alex@alex-Satellite-L635:~/src/picongpu$ make -j >> [100%] Built target splash2txt >> >> alex@alex-Satellite-L635:~/src/picongpu$ make install >> [100%] Built target splash2txt >> Install the project... >> -- Install configuration: "Debug" >> -- Up-to-date: /home/alex/paramSets/case001/./splash2txt >> >> alex@alex-Satellite-L635:~/src/picongpu$ cd ~/paramSets/case001/ >> >> alex@alex-Satellite-L635:~/paramSets/case001$ ls >> cmakeFlags include splash2txt submit >> >> >> >> >> 2016-08-09 16:37 GMT-05:00 Alex Francisco : >> >> alex@alex-Satellite-L635:~/build$ make -j install >>> make: *** No rule to make target 'install'. Alto. >>> alex@alex-Satellite-L635:~/build$ make -j >>> make: *** No se especific=C3=B3 ning=C3=BAn objetivo y no se encontr=C3= =B3 ning=C3=BAn >>> makefile. Alto. >>> >>> >>> 2016-08-09 16:35 GMT-05:00 Alex Francisco : >>> >>> alex@alex-Satellite-L635:~/build$ ~/src/picongpu/./configure >>>> ~/paramSets/case001/ >>>> cmake command: cmake -DCUDA_ARCH=3Dsm_20 -DCMAKE_INSTALL_PREFIX=3D/hom= e/a >>>> lex/paramSets/case001/ >>>> -DPIC_EXTENSION_PATH=3D/home/alex/paramSets/case001/ >>>> /home/alex/src/picongpu/. >>>> -- Building Debug >>>> -- libSplash supports PARALLEL output >>>> -- libSplash compiler definitions: -D_LARGEFILE_SOURCE;-D_LARGEFI >>>> LE64_SOURCE;-D_BSD_SOURCE;-DENABLE_HDF5=3D1 >>>> -- Found 'adios_config': /usr/bin/adios_config >>>> /usr/bin/adios_config: l=C3=ADnea 121: pkgconfig: orden no encontrada >>>> -- The directory provided by 'adios_config -d' does not exist: >>>> -- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) >>>> (Required is at least version "1.6.0") >>>> -- Boost version: 1.55.0 >>>> -- Found the following Boost libraries: >>>> -- program_options >>>> -- regex >>>> -- Configuring done >>>> -- Generating done >>>> CMake Warning: >>>> Manually-specified variables were not used by the project: >>>> >>>> PIC_EXTENSION_PATH >>>> >>>> >>>> -- Build files have been written to: /home/alex/src/picongpu >>>> alex@alex-Satellite-L635:~/build$ make -j intall >>>> make: *** No rule to make target 'intall'. Alto. >>>> alex@alex-Satellite-L635:~/build$ >>>> >>>> >>>> >>>> 2016-08-09 16:17 GMT-05:00 Marco Garten : >>>> >>>> This still looks like as if your compile process has not been successf= ul >>>>> and the executable has not been built (nor has the bin folder been >>>>> created). >>>>> >>>>> Could you please remove all the contents inside the ~/build directory= , >>>>> repeat the following steps and show us all the output from your >>>>> terminal? >>>>> >>>>> 1. Configure the example (cd ~/build && $PICSRC/configure >>>>> ~/paramSets/case001) >>>>> >>>>> 2. Compile the code (make -j install) >>>>> >>>>> Hope we can get your code running soon! >>>>> >>>>> Best, >>>>> >>>>> Marco >>>>> >>>>> >>>>> >>>>> Am 09.08.2016 um 22:34 schrieb Alex Francisco: >>>>> > When I execute this line|: | >>>>> > tbg -s qsub -c ~/paramSets/case001/submit/0016gpus.cfg -t >>>>> > ~/paramSets/case001/submit/hypnos/k20_profile.tpl ~/runs/testBatch0= 1 >>>>> > >>>>> > Show me this in my terminal: >>>>> > >>>>> > alex@alex-Satellite-L635:~/paramSets/case001$ tbg -s qsub -c >>>>> > ~/paramSets/case001/submit/0016gpus.cfg -t >>>>> > ~/paramSets/case001/submit/hypnos/k20_profile.tpl ~/runs/testBatch0= 1 >>>>> > >>>>> > cp: no se puede efectuar `stat' sobre >>>>> > =C2=AB/home/alex/paramSets/case001/bin=C2=BB: No existe el archivo = o el >>>>> directorio >>>>> > /home/alex/src/picongpu/src/tools/bin/tbg: l=C3=ADnea 354: qsub: or= den no >>>>> > encontrada >>>>> > >>>>> > thank you very much, >>>>> > I hope you can help me, >>>>> > >>>>> > Alex. >>>>> > >>>>> > 2016-08-09 13:36 GMT-05:00 Huebl, Axel >>>> > >: >>>>> > >>>>> > Your simulation has not yet run. >>>>> > >>>>> > Please check the output of the "tbg" command, the "queue" of yo= ur >>>>> batch >>>>> > system, etc. >>>>> > >>>>> > if it would have run, a "simOutput" dir would exist in the >>>>> directory you >>>>> > listed. >>>>> > >>>>> > >>>>> > Best, >>>>> > Axel >>>>> > >>>>> > On 09.08.2016 12:49, Alex Francisco wrote: >>>>> > > which is the output of the example simulation "Laser >>>>> Wakefield"?,. >>>>> > > >>>>> > > I can see is this in my folder ~/runs/testBatch01: >>>>> > > >>>>> > > alex@alex-Satellite-L635:~/runs/testBatch01$ ls >>>>> > > picongpu tbg >>>>> > > >>>>> > > Thank you very much >>>>> > > >>>>> > > Alex. >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > 2016-08-09 11:27 GMT-05:00 Ren=C3=A9 Widera >>>> > >>>>> > > >>: >>>>> > > >>>>> > > Dear Alex, >>>>> > > >>>>> > > `make install` for splash2txt copies the binary to the >>>>> folder >>>>> > > defined in `CMAKE_INSTALL_PREFIX`. >>>>> > > It not creates a `bin` folder. >>>>> > > >>>>> > > Ren=C3=A9 >>>>> > > >>>>> > > On 09.08.2016 17:48, Alex Francisco wrote: >>>>> > > >>>>> > > When I execute: |make install, ||it is not copying th= e >>>>> > binaries >>>>> > > /bin to >>>>> > > this folder, | >>>>> > > >>>>> > > alex@alex-Satellite-L635:~/paramSets/case001$ ls >>>>> > > cmakeFlags include splash2txt submit >>>>> > > >>>>> > > also when I am in the folder ~/src/picongpu, show me >>>>> this, >>>>> > when I >>>>> > > execute cmake -L: >>>>> > > >>>>> > > alex@alex-Satellite-L635:~/src/picongpu$ cmake -L >>>>> > > *CMake Error: The source >>>>> > > "/home/alex/src/picongpu/CMakeLists.txt" does >>>>> > > not match the source >>>>> > > "/home/alex/src/picongpu/src/ >>>>> tools/splash2txt/CMakeLists.txt" >>>>> > > used to >>>>> > > generate cache. Re-run cmake with a different source >>>>> > directory.* >>>>> > > -- Cache values >>>>> > > ADIOS_CONFIG:FILEPATH=3D/usr/bin/adios_config >>>>> > > CMAKE_BUILD_TYPE:STRING=3DDebug >>>>> > > CMAKE_INSTALL_PREFIX:PATH=3D/home/alex/paramSets/case= 001 >>>>> > > HDF5_DIR:PATH=3DHDF5_DIR-NOTFOUND >>>>> > > >>>>> > MPI_EXTRA_LIBRARY:STRING=3D/usr/lib/libmpi.so;/usr/lib/x86_64- >>>>> linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so >>>>> > > MPI_LIBRARY:FILEPATH=3D/usr/lib/libmpi_cxx.so >>>>> > > >>>>> > Splash_LIBRARIES:FILEPATH=3D/home/alex/lib/splash/lib/libsplas= h.a >>>>> > > Splash_ROOT_DIR:PATH=3D/home/alex/lib/splash >>>>> > > >>>>> > > >>>>> > > 2016-08-08 15:41 GMT-05:00 Marco Garten < >>>>> m.garten@hzdr.de >>>>> > >>>>> > > > >>>>> > > >>>>> > >>>: >>>>> > > >>>>> > > >>>>> > > Dear Alex, >>>>> > > >>>>> > > the TBG command as you executed it uses the >>>>> relative >>>>> path >>>>> > > from inside >>>>> > > your paramSet. The config file is located inside >>>>> > > ~/paramSets/case001/submit - just like the hardwa= re >>>>> > template >>>>> > > file >>>>> > > k20_profile.tpl is in >>>>> ~/paramSets/case001/submit/hyp >>>>> nos/. >>>>> > > So either execute the command from >>>>> ~/paramSets/case001 or >>>>> > > use the >>>>> > > absolute path. >>>>> > > >>>>> > > Don't forget to delete the folder >>>>> ~/runs/testBatch01/ >>>>> > before >>>>> > > because >>>>> > > otherwise TBG will tell you that the job name is >>>>> > already in >>>>> > > use. (The >>>>> > > run folders all contain a copy of the executable >>>>> and >>>>> the >>>>> > > parameter set >>>>> > > regardless if the job is running or not) >>>>> > > >>>>> > > You seem to be using the config files and the >>>>> architecture >>>>> > > template of >>>>> > > our home cluster on your local machine, though. >>>>> That >>>>> would >>>>> > > require you >>>>> > > to have 16 GPUs if you use the 0016gpus.cfg file. >>>>> If >>>>> you >>>>> > > want to do a >>>>> > > quick test whether the code is running at all you >>>>> can just >>>>> > > execute: >>>>> > > >>>>> > > cd ~/paramSets/case001/bin >>>>> > > >>>>> > > ./picongpu -d 1 1 1 -g 64 128 64 -s 1000 >>>>> > > >>>>> > > This will run the code with one GPU on a grid of >>>>> 64 x >>>>> > 128 x >>>>> > > 64 cells for >>>>> > > 1000 steps. >>>>> > > Please look at any of the *gpus.cfg files for >>>>> additional >>>>> > > options to the >>>>> > > command that will generate output. I would >>>>> recommend >>>>> > > something like: >>>>> > > >>>>> > > --png_e.period 50 --png_e.axis yz >>>>> --png_e.slicePoint >>>>> 0.5 >>>>> > > --png_e.folder >>>>> > > pngElectronsYZ --elec_cnt.period 50 >>>>> > > >>>>> > > This will give you the total count of electrons i= n >>>>> the >>>>> > > simulation at >>>>> > > every 50th time step and also a PNG showing a YZ >>>>> slice of >>>>> > > the electron >>>>> > > charge density. The output will now be created >>>>> directly in >>>>> > > the "bin" >>>>> > > folder where your executable is. >>>>> > > >>>>> > > Hope this works for you! >>>>> > > >>>>> > > Best, >>>>> > > >>>>> > > Marco >>>>> > > >>>>> > > Am 08.08.2016 um 18:14 schrieb Alex Francisco: >>>>> > > > Thank you very much this worked!!! >>>>> > > > >>>>> > > > When I do execute this line of code in my >>>>> terminal >>>>> > show this: >>>>> > > > >>>>> > > > alex@alex-Satellite-L635:~/src/picongpu$ tbg -s >>>>> qsub -c >>>>> > > > submit/0016gpus.cfg -t >>>>> > > ~/paramSets/case001/submit/hypnos/k20_profile.tpl >>>>> > > > ~/runs/testBatch01/ >>>>> > > > >>>>> > > > The given cfg file "submit/0016gpus.cfg" does n= ot >>>>> exist >>>>> > > (-c|--cfg). >>>>> > > > >>>>> > > > >>>>> > > > However, I turn to the folder case001 and there >>>>> show me >>>>> > > the folder >>>>> > > > testBatch01, I ask to yours, if it can be showi= ng >>>>> me >>>>> > this >>>>> > > because I once >>>>> > > > create and do not need to recreate the subfolde= r >>>>> > > (testBatch01) ?? >>>>> > > > >>>>> > > > alex@alex-Satellite-L635:~/runs$ ls >>>>> > > > testBatch01 >>>>> > > > >>>>> > > > and in the folder testBatch01 show me this file= s: >>>>> > > > >>>>> > > > alex@alex-Satellite-L635:~/runs/testBatch01$ ls >>>>> > > > picongpu tbg >>>>> > > > >>>>> > > > >>>>> > > > Furthermore, as I view the simulation output? >>>>> > > > >>>>> > > > >>>>> > > > I hope you can help me. >>>>> > > > >>>>> > > > Thank you very much. >>>>> > > > >>>>> > > > Alex Estupi=C3=B1=C3=A1n. >>>>> > > > >>>>> > > > >>>>> > > > 2016-08-06 11:33 GMT-05:00 Huebl, Axel >>>>> > >>>>> > > > >>>>> > >>>>> > > >> >>>>> > > > >>>> > >>>>> > > >>>>> > > >>>>> > >>>>: >>>>> > > > >>>>> > > > I also fixed that compile problem in >>>>> splash2txt >>>>> > by now. >>>>> > > > >>>>> > > > >>>>> > > >>>>> > > >>>>> > >https://github.com/ComputationalRadiationPhysics/picongpu/p >>>>> ull/1545 >>>> ull/1545> >>>>> > > >>>>> > >>>> ull/1545 >>>> ull/1545>> >>>>> > > >>>>> > > >>>>> > >>>> ull/1545 >>>> ull/1545> >>>>> > > >>>>> > >>>> ull/1545 >>>> ull/1545>>> >>>>> > > > >>>>> > > >>>>> > >>>> pull/1545 >>>>> > >>>> pull/1545> >>>>> > > >>>>> > >>>> ull/1545 >>>> ull/1545>> >>>>> > > >>>>> > > >>>>> > >>>> ull/1545 >>>> ull/1545> >>>>> > > >>>>> > >>>> ull/1545 >>>> ull/1545>>>> >>>>> > > > >>>>> > > > You can just remove or comment out via "//" >>>>> the line >>>>> > > that is causing the >>>>> > > > error. >>>>> > > > >>>>> > > > >>>>> > > > Axel >>>>> > > > >>>>> > > > On 06.08.2016 11:07, Axel Huebl wrote: >>>>> > > > > Dear Alex, >>>>> > > > > >>>>> > > > > You don't need to build the helper tool i= n >>>>> > > post-processing, >>>>> > > > splash2txt for now. Just skip step 6. >>>>> > > > > >>>>> > > > > Otherwise: please make sure the source co= de >>>>> is >>>>> > > unmodified. For >>>>> > > > compile errors, please report compiler >>>>> version, >>>>> > cmake >>>>> > > version, cmake >>>>> > > > -L . output and ubuntu version. >>>>> > > > > >>>>> > > > > Compile issues are also best tracked in o= ur >>>>> github >>>>> > > since we can >>>>> > > > assign, track, link and archive it there. >>>>> > > > > >>>>> > > > > Axel >>>>> > > > > >>>>> > > > > On August 6, 2016 10:56:09 AM EDT, >>>>> "Bussmann, Dr. >>>>> > > Michael (FWKT) - >>>>> > > > 4167" >>>> > >>>> > > >>>>> > > >>>>> > >> >>>>> > > >>>> m.bussmann@hzdr.de> >>>>> > > >>>>> > > >>>>> > >>>> >>>>> wrote: >>>>> > > > >> Dear Alex, >>>>> > > > >> >>>>> > > > >> Could you please tell us which version = of >>>>> > PIConGPU >>>>> > > you are >>>>> > > using, >>>>> > > > >> provide CMake log files and >>>>> CMakeLists.txt >>>>> so we >>>>> > > can have >>>>> > > a look at >>>>> > > > >> what >>>>> > > > >> is going on. >>>>> > > > >> >>>>> > > > >> Best, Michael >>>>> > > > >> >>>>> > > > >> Am 05.08.2016 um 18:13 schrieb Alex >>>>> Francisco: >>>>> > > > >>> Dear Michael Bussmann and picongpu >>>>> users: >>>>> > > > >>> >>>>> > > > >>> I appreciate your help, I already >>>>> > understood that >>>>> > > ADIOS >>>>> > > is optional, >>>>> > > > >> but >>>>> > > > >>> when i continue, my ubuntu terminal sh= ow >>>>> > me, the >>>>> > > following error, >>>>> > > > >> when I >>>>> > > > >>> execute the step 6 "make -j": >>>>> > > > >>> >>>>> > > > >>> [ 50%] Building CXX object >>>>> > > > CMakeFiles/splash2txt.dir/splash2txt.cpp.o >>>>> > > > >>> >>>>> > > >>>>> > /home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp: I= n >>>>> > > > >> function >>>>> > > > >>> =E2=80=98bool parseOptions(int, char**= , >>>>> > ProgramOptions&)=E2=80=99: >>>>> > > > >>> >>>>> > > >>>>> > > >>>>> > /home/alex/src/picongpu/src/tools/splash2txt/splash2txt.cpp: >>>>> 164:24: >>>>> > > > >>> error: =E2=80=98desc=E2=80=99 was not = declared in this >>>>> scope >>>>> > > > >>> errorStream << desc << "\n"; >>>>> > > > >>> ^ >>>>> > > > >>> CMakeFiles/splash2txt.dir/buil >>>>> d.make:54: >>>>> recipe >>>>> > > for target >>>>> > > > >>> >>>>> > 'CMakeFiles/splash2txt.dir/splash2txt.cpp.o' failed >>>>> > > > >>> make[2]: *** >>>>> > > [CMakeFiles/splash2txt.dir/splash2txt.cpp.o] >>>>> > > Error 1 >>>>> > > > >>> CMakeFiles/Makefile2:60: recipe for >>>>> target >>>>> > > > >>> 'CMakeFiles/splash2txt.dir/all' failed >>>>> > > > >>> make[1]: *** >>>>> > [CMakeFiles/splash2txt.dir/all] Error 2 >>>>> > > > >>> Makefile:117: recipe for target 'all' >>>>> failed >>>>> > > > >>> make: *** [all] Error 2 >>>>> > > > >>> >>>>> > > > >>> Im=C3=A1genes integradas 1 >>>>> > > > >>> >>>>> > > > >>> >>>>> > > > >>> I hope you can help me. >>>>> > > > >>> >>>>> > > > >>> Thank you very much. >>>>> > > > >>> >>>>> > > > >>> Alex Estupi=C3=B1=C3=A1n. >>>>> > > > >>> >>>>> > > > >>> >>>>> > > > >>> 2016-08-02 6:34 GMT-05:00 Bussmann, Dr= . >>>>> Michael >>>>> > > (FWKT) - 4167 >>>>> > > > >>> >>>> > >>>> > > >>>>> > > >>>>> > >> >>>>> > > >>>> m.bussmann@hzdr.de> >>>>> > > >>>>> > > >>>>> > >>> >>>>> > > > >>>> > >>>>> > > >>>> >> >>>>> > >>>>> > > >>>> >>> >>>>> > > >>>> m.bussmann@hzdr.de> >>>>> > > >>>>> > > >>>>> > >>>>>: >>>>> > > > >>> >>>>> > > > >>> Oops, sorry, you completed step 5 >>>>> and >>>>> > can go >>>>> > > to step >>>>> > > 6. My bad! >>>>> > > > >>> >>>>> > > > >>> Am 02.08.2016 um 13:25 schrieb >>>>> > Bussmann, Dr. >>>>> > > Michael >>>>> > > (FWKT) - >>>>> > > > >> 4167: >>>>> > > > >>> > Dear Alex, >>>>> > > > >>> > >>>>> > > > >>> > As Axel pointed out in his E-mai= l, >>>>> > this is no >>>>> > > error. It simply >>>>> > > > >>> tells you >>>>> > > > >>> > that a software component is >>>>> missing >>>>> > that is >>>>> > > optional, but not >>>>> > > > >>> required >>>>> > > > >>> > to build PIConGPU. This means >>>>> > PIConGPU can use >>>>> > > ADIOS, but does >>>>> > > > >> not >>>>> > > > >>> need >>>>> > > > >>> > it to run properly. >>>>> > > > >>> > >>>>> > > > >>> > Yes, this is a bit confusing, bu= t >>>>> as you >>>>> > > see the >>>>> > > output tells >>>>> > > > >> you that >>>>> > > > >>> > your build files have been writt= en >>>>> to >>>>> > > /home/alex/src/picongpu. >>>>> > > > >> So >>>>> > > > >>> > everything is fine! >>>>> > > > >>> > >>>>> > > > >>> > You have now completed step 6 in >>>>> the >>>>> > install >>>>> > > process, see >>>>> > > > here: >>>>> > > > >>> > >>>>> > > > >>> >>>>> > > > >> >>>>> > > > >>>>> > > >>>>> > > >>>>> > https://github.com/ComputationalRadiationPhysics/picongpu/bl >>>>> ob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>> > > >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>>> >>>>> > > > >>>>> > > >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>>>> >>>>> > > > >>> >>>>> > > > >> >>>>> > > > >>>>> > > >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>>> >>>>> > > > >>>>> > > >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md> >>>>> > > >>>>> > >>>> lob/release-0.1.2/doc/INSTALL.md >>>>> > >>>> blob/release-0.1.2/doc/INSTALL.md>>>>> >>>>> > > > >>> > >>>>> > > > >>> > As Axel also wrote, you can now >>>>> simply go >>>>> > > to step >>>>> > > 7, typing >>>>> > > > >> 'make'. >>>>> > > > >>> > >>>>> > > > >>> > If you run into problems, please >>>>> provide >>>>> > > error log >>>>> > > files with >>>>> > > > >> your >>>>> > > > >>> > E-mails and keep posting to the >>>>> Users >>>>> > > mailing list. >>>>> > > > >>> > >>>>> > > > >>> > Hope this helps, Michael >>>>> > > > >>> > >>>>> > > > >>> > Am 02.08.2016 um 03:38 schrieb >>>>> Alex >>>>> > Francisco: >>>>> > > > >>> >> Dear Michael Bussmann: >>>>> > > > >>> >> >>>>> > > > >>> >> I hope you are well. I am a >>>>> doctoral >>>>> > > student at the >>>>> > > > University >>>>> > > > >> of >>>>> > > > >>> >> Colombia UIS. I am installing t= he >>>>> > PiconGpu >>>>> > > program >>>>> > > on my >>>>> > > > >> laptop, my >>>>> > > > >>> >> laptop has a software ubuntu >>>>> 16.04 >>>>> > LTS 64-bit. >>>>> > > > >>> >> >>>>> > > > >>> >> My ubuntu terminal shows me the >>>>> > following >>>>> > > error: >>>>> > > > >>> >> >>>>> > > > >>> >> -- Could NOT find ADIOS (missin= g: >>>>> > > ADIOS_LIBRARIES >>>>> > > > >>> ADIOS_INCLUDE_DIRS) >>>>> > > > >>> >> (Required is at least version >>>>> "1.6.0") >>>>> > > > >>> >> >>>>> > > > >>> >> >>>>> > > > >>> >> Im=C3=A1genes integradas 1 >>>>> > > > >>> >> >>>>> > > > >>> >> >>>>> > > > >>> >> the problem still, I am very >>>>> > interested in >>>>> > > I can >>>>> > > solve this >>>>> > > > >>> problem. I >>>>> > > > >>> >> need install this program for >>>>> work >>>>> in my >>>>> > > doctoral job. >>>>> > > > >>> >> >>>>> > > > >>> >> I hope you can help me. >>>>> > > > >>> >> >>>>> > > > >>> >> Thank you very much. >>>>> > > > >>> >> >>>>> > > > >>> >> Alex Estupi=C3=B1=C3=A1n. >>>>> > > > >>> >> >>>>> > > > >>> > >>>>> > > > >>> > >>>>> > > >>>>> > ############################################################# >>>>> > > > >>> > This message is sent to you >>>>> because >>>>> > you are >>>>> > > subscribed to >>>>> > > > >>> > the mailing list >>>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>> > >>>>> > > >>>> > >>> >>>>> > > > >>> >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>> > >>>>> > > >>>> > >>>>>. >>>>> > > > >>> > To unsubscribe, E-mail to: >>>>> > > >>>> > >>>>> > >>>> picongpu-users-off@hzd >>>>> r.de>> >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>> >>>>> > > > >>> >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>>>> >>>>> > > > >>> > To switch to the DIGEST mode, >>>>> E-mail >>>>> to >>>>> > > > >>> >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>> >>>>> > > > >> >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>>>> >>>>> > > > >>> > To switch to the INDEX mode, E-ma= il >>>>> to >>>>> > > > >>> >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>> >>>>> > > > >> >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>>>> >>>>> > > > >>> > Send administrative queries to >>>>> > > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > >>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >>> >>>>> > > > >>> >>>> t@hzdr.de >>>>> > >>>>> > > >>>> > > >>>>> > > >>>> > >>>>> > > >>>> > >> >>>>> > > > >>>> > >>>>> > > >>> >>>> --001a114e4368cfc899053b154af9 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Dear developer= s PicOnGpu:

I = install the program again and I = already are creating the "bin" folder in the directory ~ / Par= amSet / case001

a= lex@alex-Satellite-L635:~/paramSets/case001$ ls
bin=C2=A0 cmakeFlags=C2= =A0 include=C2=A0 lib=C2=A0 share=C2=A0 submit


When I e= xecute the netx instructions, show me this:

alex@alex-S= atellite-L635:~/paramSets/case001$ tbg -s qsub -c submit/0016gpus.cfg -t su= bmit/hypnos/k20_profile.tpl ~/runs/testBatch01

/home/alex/src/picon= gpu/src/tools/bin/tbg: l=C3=ADnea 354: qsub: orden no encontrada

ale= x@alex-Satellite-L635:~/runs/testBatch01$=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2= =A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 $PICSRC/configure -i ~/paramSets/ca= se002 ~/runs/testBatch01
cmake command: cmake=C2=A0 -DCMAKE_INSTALL_PREF= IX=3D/home/alex/paramSets/case002 -DPIC_EXTENSION_PATH=3D/home/alex/runs/te= stBatch01=C2=A0=C2=A0 /home/alex/src/picongpu
-- Building libSplash vers= ion 1.4.0
-- Building RELEASE version
-- Parallel HDF5 found. Buildin= g parallel version
-- Building splashtools
-- Building splashtools pa= rallel version
-- Configuring done
-- Generating done
-- Build fil= es have been written to: /home/alex/src/picongpu


<= span id=3D"result_box" class=3D"" lang=3D"en">it is an error or that the order does not exist for= the instructions of tbg or qsub "wron= g Fingered".
I hope can you help me,

Thank you very = much.

Alex

2016-08-= 10 3:35 GMT-05:00 Garten, Marco <m.garten@hzdr.de>:
Did you perhaps execute the $PICSRC/configure comm= and inside your
home/alex/src/picongpu before? That will create some files there and will s= top you
from compiling correctly.

First check if you have any changes in your source code:

cd ~/src/picongpu

git status

--> Please show us the output of this

If you have any modified or new files in there and NO intentional changes you can do:

git reset --hard HEAD

That resets your local index and working tree to the state of the branch as it was when you downloaded it. (Careful: it will also delete your change= s
if you made some)

Now you can retry building PIConGPU again:

rm -r ~/build/*

cd ~/build

$PICSRC/configure ~/paramSets/case001

make -j install
(please only do the make command inside the build directory
- if the configure command writes to any other directory than build
that is a sign that something went wrong)

--> Please send us all the output until there again

Best,

Marco

Am Tue, 9 Aug 2016 16:50:05 -0500 schrieb Alex Francisco <djlexes@gmail.com>:
alex@alex-Satellite-L635:~/src/picongpu$ ./configure ~/paramSets/case0= 01
cmake command: cmake -DCUDA_ARCH=3Dsm_20
-DCMAKE_INSTALL_PREFIX=3D/home/alex/paramSets/case001
-DPIC_EXTENSION_PATH=3D/home/alex/paramSets/case001=C2=A0 =C2=A0.
-- Building Debug
-- libSplash supports PARALLEL output
-- libSplash compiler definitions:
-D_LARGEFILE_SOURCE;-D_LARGEFILE64_SOURCE;-D_BSD_SOURCE;-DENABLE_= HDF5=3D1
-- Found 'adios_config': /usr/bin/adios_config
/usr/bin/adios_config: l=C3=ADnea 121: pkgconfig: orden no encontrada
-- The directory provided by 'adios_config -d' does not exist:
-- Could NOT find ADIOS (missing:=C2=A0 ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS)=
(Required is at least version "1.6.0")
-- Boost version: 1.55.0
-- Found the following Boost libraries:
--=C2=A0 =C2=A0program_options
--=C2=A0 =C2=A0regex
-- Configuring done
-- Generating done
-- Build files have been written to: /home/alex/src/picongpu

alex@alex-Satellite-L635:~/src/picongpu$ make -j
[100%] Built target splash2txt

alex@alex-Satellite-L635:~/src/picongpu$ make install
[100%] Built target splash2txt
Install the project...
-- Install configuration: "Debug"
-- Up-to-date: /home/alex/paramSets/case001/./splash2txt

alex@alex-Satellite-L635:~/src/picongpu$ cd ~/paramSets/case001/

alex@alex-Satellite-L635:~/paramSets/case001$ ls
cmakeFlags=C2=A0 include=C2=A0 splash2txt=C2=A0 submit




2016-08-09 16:37 GMT-05:00 Alex Francisco <djlexes@gmail.com>:

alex@alex-Satellite-L635:~/build$ make -j install
make: *** No rule to make target 'install'.=C2=A0 Alto.
alex@alex-Satellite-L635:~/build$ make -j
make: *** No se especific=C3=B3 ning=C3=BAn objetivo y no se encontr=C3=B3 = ning=C3=BAn
makefile.=C2=A0 Alto.


2016-08-09 16:35 GMT-05:00 Alex Francisco <djlexes@gmail.com>:

alex@alex-Satellite-L635:~/build$ ~/src/picongpu/./configure
~/paramSets/case001/
cmake command: cmake -DCUDA_ARCH=3Dsm_20 -DCMAKE_INSTALL_PREFIX=3D/home/alex/paramSets/case001/
-DPIC_EXTENSION_PATH=3D/home/alex/paramSets/case001/
/home/alex/src/picongpu/.
-- Building Debug
-- libSplash supports PARALLEL output
-- libSplash compiler definitions: -D_LARGEFILE_SOURCE;-D_LARGEFI
LE64_SOURCE;-D_BSD_SOURCE;-DENABLE_HDF5=3D1
-- Found 'adios_config': /usr/bin/adios_config
/usr/bin/adios_config: l=C3=ADnea 121: pkgconfig: orden no encontrada
-- The directory provided by 'adios_config -d' does not exist:
-- Could NOT find ADIOS (missing:=C2=A0 ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS)=
(Required is at least version "1.6.0")
-- Boost version: 1.55.0
-- Found the following Boost libraries:
--=C2=A0 =C2=A0program_options
--=C2=A0 =C2=A0regex
-- Configuring done
-- Generating done
CMake Warning:
=C2=A0 Manually-specified variables were not used by the project:

=C2=A0 =C2=A0 PIC_EXTENSION_PATH


-- Build files have been written to: /home/alex/src/picongpu
alex@alex-Satellite-L635:~/build$ make -j intall
make: *** No rule to make target 'intall'.=C2=A0 Alto.
alex@alex-Satellite-L635:~/build$



2016-08-09 16:17 GMT-05:00 Marco Garten <m.garten@hzdr.de>:

This still looks like as if your compile process has not been successful and the executable has not been built (nor has the bin folder been
created).

Could you please remove all the contents inside the ~/build directory,
repeat the following steps and show us all the output from your terminal?
1. Configure the example (cd ~/build && $PICSRC/configure
~/paramSets/case001)

2. Compile the code (make -j install)

Hope we can get your code running soon!

Best,

Marco



Am 09.08.2016 um 22:34 schrieb Alex Francisco:
> When I execute this line|: |
> tbg -s qsub -c ~/paramSets/case001/submit/0016gpus.cfg -t
> ~/paramSets/case001/submit/hypnos/k20_profile.tpl ~/runs/testBatc= h01
>
> Show me this in my terminal:
>
> alex@alex-Satellite-L635:~/paramSets/case001$ tbg -s qsub -c
> ~/paramSets/case001/submit/0016gpus.cfg -t
> ~/paramSets/case001/submit/hypnos/k20_profile.tpl ~/runs/testBatc= h01
>
> cp: no se puede efectuar `stat' sobre
> =C2=AB/home/alex/paramSets/case001/bin=C2=BB: No existe el archiv= o o el
directorio
> /home/alex/src/picongpu/src/tools/bin/tbg: l=C3=ADnea 354: qsub: = orden no
> encontrada
>
> thank you very much,
> I hope you can help me,
>
> Alex.
>
> 2016-08-09 13:36 GMT-05:00 Huebl, Axel <a.huebl@hzdr.de
> <mailto:a.hueb= l@hzdr.de>>:
>
>=C2=A0 =C2=A0 =C2=A0Your simulation has not yet run.
>
>=C2=A0 =C2=A0 =C2=A0Please check the output of the "tbg" comm= and, the "queue" of your
batch
>=C2=A0 =C2=A0 =C2=A0system, etc.
>
>=C2=A0 =C2=A0 =C2=A0if it would have run, a "simOutput" dir w= ould exist in the
directory you
>=C2=A0 =C2=A0 =C2=A0listed.
>
>
>=C2=A0 =C2=A0 =C2=A0Best,
>=C2=A0 =C2=A0 =C2=A0Axel
>
>=C2=A0 =C2=A0 =C2=A0On 09.08.2016 12:49, Alex Francisco wrote:
>=C2=A0 =C2=A0 =C2=A0> which is the output of the example simulation = "Laser
Wakefield"?,.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> I can see is this in my folder ~/runs/testBatc= h01:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> alex@alex-Satellite-L635:~/runs/testBatch= 01$ ls
>=C2=A0 =C2=A0 =C2=A0> picongpu=C2=A0 tbg
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> Thank you very much
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> Alex.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0> 2016-08-09 11:27 GMT-05:00 Ren=C3=A9 Widera &l= t;r.widera@hzdr.de
>=C2=A0 =C2=A0 =C2=A0<mailto:
r.widera@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0> <mailto:r.widera@hzdr.de <mailto:r.widera@hzdr.de>>>:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0`make install` for splash2t= xt copies the binary to the folder
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0defined in `CMAKE_INSTALL_P= REFIX`.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0It not creates a `bin` fold= er.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0Ren=C3=A9
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0On 09.08.2016 17:48, Alex F= rancisco wrote:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0When I execut= e: |make install, ||it is not copying the
>=C2=A0 =C2=A0 =C2=A0binaries
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0/bin to
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0this folder, = |
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0alex@alex-Sat= ellite-L635:~/paramSets/case001$ ls
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0cmakeFlags=C2= =A0 include=C2=A0 splash2txt=C2=A0 submit
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0also when I a= m in the folder ~/src/picongpu, show me
this,
>=C2=A0 =C2=A0 =C2=A0when I
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0execute cmake= -L:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0alex@alex-Sat= ellite-L635:~/src/picongpu$ cmake -L
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0*CMake Error:= The source
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0"/home/a= lex/src/picongpu/CMakeLists.txt" does
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0not match the= source
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0"/home/a= lex/src/picongpu/src/
tools/splash2txt/CMakeLists.txt"
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0used to
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0generate cach= e.=C2=A0 Re-run cmake with a different source
>=C2=A0 =C2=A0 =C2=A0directory.*
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0-- Cache valu= es
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0ADIOS_CONFIG:= FILEPATH=3D/usr/bin/adios_config
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0CMAKE_BUILD_T= YPE:STRING=3DDebug
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0CMAKE_INSTALL= _PREFIX:PATH=3D/home/alex/paramSets/case001
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0HDF5_DIR:PATH= =3DHDF5_DIR-NOTFOUND
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 MPI_EXTRA_LIBRARY:STRING=3D/usr/lib/libmpi.so= ;/usr/lib/x86_64-
linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0MPI_LIBRARY:F= ILEPATH=3D/usr/lib/libmpi_cxx.so
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 Splash_LIBRARIES:FILEPATH=3D/home/alex/lib/sp= lash/lib/libsplash.a
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Splash_ROOT_D= IR:PATH=3D/home/alex/lib/splash
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A02016-08-08 15= :41 GMT-05:00 Marco Garten <
m.garten@hzdr.de<= br> >=C2=A0 =C2=A0 =C2=A0<mailto:m.garten@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.garten@hzdr.de &l= t;mailto:m.garten@hzd= r.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.garten@hzdr.de &l= t;mailto:m.garten@hzd= r.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.garten@hzdr.de <mailto:m.garten@hzdr.de>>>>:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0the TBG command as you executed it uses the relative
path
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0from inside >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0your paramSet. The config file is located inside
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0~/paramSets/case001/submit - just like the hardware
>=C2=A0 =C2=A0 =C2=A0template
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0file
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0k20_profile.tpl is in ~/paramSets/case001/submit/hyp
nos/.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0So either execute the command from
~/paramSets/case001 or
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0use the
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0absolute path.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Don't forget to delete the folder ~/runs/testBatch01/
>=C2=A0 =C2=A0 =C2=A0before
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0because
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0otherwise TBG will tell you that the job name is
>=C2=A0 =C2=A0 =C2=A0already in
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0use. (The
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0run folders all contain a copy of the executable and
the
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0parameter set=
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0regardless if the job is running or not)
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0You seem to be using the config files and the
architecture
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0template of >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0our home cluster on your local machine, though. That
would
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0require you >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0to have 16 GPUs if you use the 0016gpus.cfg file. If
you
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0want to do a<= br> >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0quick test whether the code is running at all you
can just
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0execute:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0cd ~/paramSets/case001/bin
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0./picongpu -d 1 1 1 -g 64 128 64 -s 1000
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0This will run the code with one GPU on a grid of 64 x
>=C2=A0 =C2=A0 =C2=A0128 x
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A064 cells for<= br> >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A01000 steps.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Please look at any of the *gpus.cfg files for
additional
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0options to th= e
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0command that will generate output. I would recommend
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0something lik= e:
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0--png_e.period 50 --png_e.axis yz --png_e.slicePoint
0.5
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0--png_e.folde= r
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0pngElectronsYZ --elec_cnt.period 50
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0This will give you the total count of electrons in
the
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0simulation at=
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0every 50th time step and also a PNG showing a YZ
slice of
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0the electron<= br> >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0charge density. The output will now be created
directly in
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0the "bin= "
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0folder where your executable is.
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Hope this works for you!
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Best,
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Marco
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Am 08.08.2016 um 18:14 schrieb Alex Francisco:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> Thank you very much this worked!!!
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> When I do execute this line of code in my terminal
>=C2=A0 =C2=A0 =C2=A0show this:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> alex@alex-Satellite-L635:~/src/picongpu$ tbg -s
qsub -c
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> submit/0016gpus.cfg -t
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0~/paramSets/c= ase001/submit/hypnos/k20_profile.tpl
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> ~/runs/testBatch01/
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> The given cfg file "submit/0016gpus.cfg" does not
exist
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(-c|--cfg). >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> However, I turn to the folder case001 and there
show me
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0the folder >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> testBatch01, I ask to yours, if it can be showing
me
>=C2=A0 =C2=A0 =C2=A0this
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0because I onc= e
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> create and do not need to recreate the subfolder
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(testBatch01)= ??
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> alex@alex-Satellite-L635:~/runs$ ls
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> testBatch01
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> and in the folder testBatch01 show me this files:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> alex@alex-Satellite-L635:~/runs/testBatch01$ ls
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> picongpu=C2=A0 tbg
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> Furthermore, as I view the simulation output?
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> I hope you can help me.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> Thank you very much.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> Alex Estupi=C3=B1=C3=A1n.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0> 2016-08-06 11:33 GMT-05:00 Huebl, Axel
>=C2=A0 =C2=A0 =C2=A0<a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:a.huebl@hzdr.de <= mailto:a.huebl@hzdr.de= >>
>=C2=A0 =C2=A0 =C2=A0<mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:a.huebl@hzdr.de <= mailto:a.huebl@hzdr.de= >>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 > <mailto:a.= huebl@hzdr.de <mailto:a.huebl@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:a.huebl@hzdr.de <= mailto:a.huebl@hzdr.de= >
>=C2=A0 =C2=A0 =C2=A0<mailto:a.huebl@hzdr.de <mailto:a.huebl@hzdr.de>>>>>:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0I also fixed that compile problem in splash2txt<= br> >=C2=A0 =C2=A0 =C2=A0by now.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 >https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0<https://github= .com/ComputationalRadiationPhysics/picongpu/
pull/1545
>=C2=A0 =C2=A0 =C2=A0<https://github= .com/ComputationalRadiationPhysics/picongpu/
pull/1545>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/p
ull/1545 <https://github.com/Computati= onalRadiationPhysics/picongpu/p
ull/1545>>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0You can just remove or comment out via "//&= quot;
the line
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0that is causi= ng the
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0error.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0Axel
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0On 06.08.2016 11:07, Axel Huebl wrote:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0> Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0> You don't need to build the helper tool= in
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0post-processi= ng,
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0splash2txt for now. Just skip step 6.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0> Otherwise: please make sure the source code=
is
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0unmodified. F= or
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0compile errors, please report compiler version,<= br> >=C2=A0 =C2=A0 =C2=A0cmake
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0version, cmak= e
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0-L . output and ubuntu version.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0> Compile issues are also best tracked in our=
github
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0since we can<= br> >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0assign, track, link and archive it there.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0> Axel
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0>=C2=A0 =C2=A0 =C2=A0> On August 6, 2016 10:56:09 AM EDT,
"Bussmann, Dr.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Michael (FWKT= ) -
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A04167" <m.bussmann@hzdr.de
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de> <mailto:m.bussmann@hzdr.de
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0<mailto:m.bus= smann@hzdr.de <mailto:
m.bussmann@hzdr.de<= /a>>
>=C2=A0 =C2=A0 =C2=A0<mailto:
m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>>&= gt; wrote:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> Dear Alex,
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> Could you please tell us which version= of
>=C2=A0 =C2=A0 =C2=A0PIConGPU
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0you are
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0using,
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> provide CMake log files and CMakeLists= .txt
so we
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0can have
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0a look at
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> what
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> is going on.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> Best, Michael
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> Am 05.08.2016 um 18:13 schrieb Alex Francisco:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> Dear Michael Bussmann and picongpu= users:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> I appreciate your help, I already<= br> >=C2=A0 =C2=A0 =C2=A0understood that
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0ADIOS
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0is optional,
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> but
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> when i continue, my ubuntu termina= l show
>=C2=A0 =C2=A0 =C2=A0me, the
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0following error,
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> when I
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> execute the step 6 "make -j&q= uot;:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> [ 50%] Building CXX object
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0CMakeFiles/splash2txt.dir/splash2txt.cpp.o=
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 /home/alex/src/picongpu/src/tools/splash2txt/= splash2txt.cpp: In
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> function
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> =E2=80=98bool parseOptions(int, ch= ar**,
>=C2=A0 =C2=A0 =C2=A0ProgramOptions&)=E2=80=99:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 /home/alex/src/picongpu/src/tools/splash2txt/= splash2txt.cpp:
164:24:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> error: =E2=80=98desc=E2=80=99 was = not declared in this
scope
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 = errorStream << desc << "\n";
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0^
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> CMakeFiles/splash2txt.dir/build.make:54:
recipe
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0for target >=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0'CMakeFiles/splash2txt.dir/splash2txt.cpp.= o' failed
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> make[2]: ***
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[CMakeFiles/s= plash2txt.dir/splash2txt.cpp.o]
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0Error 1
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> CMakeFiles/Makefile2:60: recipe fo= r target
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> 'CMakeFiles/splash2txt.dir/all= ' failed
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> make[1]: ***
>=C2=A0 =C2=A0 =C2=A0[CMakeFiles/splash2txt.dir/all] Error 2
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> Makefile:117: recipe for target &#= 39;all'
failed
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> make: *** [all] Error 2
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> Im=C3=A1genes integradas 1
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> I hope you can help me.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> Thank you very much.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> Alex Estupi=C3=B1=C3=A1n.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> 2016-08-02 6:34 GMT-05:00 Bussmann= , Dr.
Michael
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(FWKT) - 4167=
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>> <m.bussmann@hzdr.de
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de> <mailto:m.bussmann@hzdr.de
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0<mailto:m.bus= smann@hzdr.de <mailto:
m.bussmann@hzdr.de<= /a>>
>=C2=A0 =C2=A0 =C2=A0<mailto:
m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0<mailto:m.bus= smann@hzdr.de <mailto:
m.bussmann@hzdr.de<= /a>>
>=C2=A0 =C2=A0 =C2=A0<mailto:
m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.buss= mann@hzdr.de>
>=C2=A0 =C2=A0 =C2=A0<mailto:m.bussmann@hzdr.de <mailto:m.bussmann@hzdr.de>>>>&= gt;>:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0Oops, sorry, yo= u completed step 5 and
>=C2=A0 =C2=A0 =C2=A0can go
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0to step
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A06. My bad!
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0Am 02.08.2016 u= m 13:25 schrieb
>=C2=A0 =C2=A0 =C2=A0Bussmann, Dr.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Michael
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0(FWKT) -
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> 4167:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> Dear Alex,=
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> As Axel po= inted out in his E-mail,
>=C2=A0 =C2=A0 =C2=A0this is no
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0error. It simply
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0tells you
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> that a sof= tware component is missing
>=C2=A0 =C2=A0 =C2=A0that is
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0optional, but not
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0required
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> to build P= IConGPU. This means
>=C2=A0 =C2=A0 =C2=A0PIConGPU can use
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0ADIOS, but does
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> not
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0need
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> it to run = properly.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> Yes, this = is a bit confusing, but
as you
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0see the
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0output tells
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> you that
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> your build= files have been written
to
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0/home/alex/src/picongpu.
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>> So
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> everything= is fine!
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0> You have n= ow completed step 6 in the
>=C2=A0 =C2=A0 =C2=A0install
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0process, see
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0here:
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>>
>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 >=C2=A0 =C2=A0 =C2=A0>>
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>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 https://github.= com/ComputationalRadiationPhysics/picongpu/bl
ob/release-0.1.2/doc/INSTALL.md
>=C2=A0 =C2=A0 =C2=A0<https://github= .com/ComputationalRadiationPhysics/picongpu/
blob/release-0.1.2/doc/INSTALL.md>
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lob/release-0.1.2/doc/INSTALL.md
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blob/release-0.1.2/doc/INSTALL.md>
>=C2=A0 =C2=A0 =C2=A0>
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>=C2=A0 =C2=A0 =C2=A0<https://github= .com/ComputationalRadiationPhysics/picongpu/
blob/release-0.1.2/doc/INSTALL.md>>>
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lob/release-0.1.2/doc/INSTALL.md
>=C2=A0 =C2=A0 =C2=A0<https://github= .com/ComputationalRadiationPhysics/picongpu/
blob/release-0.1.2/doc/INSTALL.md>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/b
lob/release-0.1.2/doc/INSTALL.md
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blob/release-0.1.2/doc/INSTALL.md>>
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blob/release-0.1.2/doc/INSTALL.md>
>=C2=A0 =C2=A0 =C2=A0>
>=C2=A0 =C2=A0 =C2=A0 <https://gith= ub.com/ComputationalRadiationPhysics/picongpu/b
lob/release-0.1.2/doc/INSTALL.md
>=C2=A0 =C2=A0 =C2=A0<https://github= .com/ComputationalRadiationPhysics/picongpu/
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>=C2=A0 =C2=A0 =C2=A0>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0<mailto:picongpu-users@hz= dr.de
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